protEncode/plm_mutation_cpu.yml at main · BIMSBbioinfo/protEncode · GitHub

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name: /exports/eddie/scratch/s2227580/embd_berlin
channels:
  - pytorch
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=4_kmp_llvm
  - alsa-lib=1.2.14=hb9d3cd8_0
  - biopython=1.85=py311h49ec1c0_2
  - blas=1.0=mkl
  - brotli=1.1.0=hb03c661_4
  - brotli-bin=1.1.0=hb03c661_4
  - brotli-python=1.1.0=py311h1ddb823_4
  - bzip2=1.0.8=hda65f42_8
  - ca-certificates=2025.8.3=hbd8a1cb_0
  - cairo=1.18.4=h3394656_0
  - certifi=2025.8.3=pyhd8ed1ab_0
  - cffi=1.17.1=py311h5b438cf_1
  - charset-normalizer=3.4.3=pyhd8ed1ab_0
  - colorama=0.4.6=pyhd8ed1ab_1
  - contourpy=1.3.3=py311hdf67eae_2
  - cpython=3.11.13=py311hd8ed1ab_0
  - cuda-cudart=12.4.127=he02047a_2
  - cuda-cudart_linux-64=12.4.127=h85509e4_2
  - cuda-cupti=12.4.127=he02047a_2
  - cuda-libraries=12.4.1=ha770c72_1
  - cuda-nvrtc=12.4.127=he02047a_2
  - cuda-nvtx=12.4.127=he02047a_2
  - cuda-opencl=12.4.127=he02047a_1
  - cuda-runtime=12.4.1=ha804496_0
  - cuda-version=12.4=h3060b56_3
  - cycler=0.12.1=pyhd8ed1ab_1
  - cyrus-sasl=2.1.28=hd9c7081_0
  - dbus=1.16.2=h3c4dab8_0
  - double-conversion=3.3.1=h5888daf_0
  - filelock=3.19.1=pyhd8ed1ab_0
  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  - font-ttf-inconsolata=3.000=h77eed37_0
  - font-ttf-source-code-pro=2.038=h77eed37_0
  - font-ttf-ubuntu=0.83=h77eed37_3
  - fontconfig=2.15.0=h7e30c49_1
  - fonts-conda-ecosystem=1=0
  - fonts-conda-forge=1=0
  - fonttools=4.60.0=py311h3778330_0
  - freetype=2.14.1=ha770c72_0
  - gmp=6.3.0=hac33072_2
  - gmpy2=2.2.1=py311h92a432a_1
  - graphite2=1.3.14=hecca717_2
  - h2=4.3.0=pyhcf101f3_0
  - harfbuzz=11.5.0=h15599e2_0
  - hpack=4.1.0=pyhd8ed1ab_0
  - hyperframe=6.1.0=pyhd8ed1ab_0
  - icu=75.1=he02047a_0
  - idna=3.10=pyhd8ed1ab_1
  - jinja2=3.1.6=pyhd8ed1ab_0
  - keyutils=1.6.3=hb9d3cd8_0
  - kiwisolver=1.4.9=py311h724c32c_1
  - krb5=1.21.3=h659f571_0
  - lcms2=2.17=h717163a_0
  - ld_impl_linux-64=2.44=h1423503_1
  - lerc=4.0.0=h0aef613_1
  - libblas=3.9.0=20_linux64_mkl
  - libbrotlicommon=1.1.0=hb03c661_4
  - libbrotlidec=1.1.0=hb03c661_4
  - libbrotlienc=1.1.0=hb03c661_4
  - libcblas=3.9.0=20_linux64_mkl
  - libclang-cpp21.1=21.1.0=default_h99862b1_1
  - libclang13=21.1.0=default_h746c552_1
  - libcublas=12.4.5.8=he02047a_2
  - libcufft=11.2.1.3=he02047a_2
  - libcufile=1.9.1.3=he02047a_2
  - libcups=2.3.3=hb8b1518_5
  - libcurand=10.3.5.147=he02047a_2
  - libcusolver=11.6.1.9=he02047a_2
  - libcusparse=12.3.1.170=he02047a_2
  - libdeflate=1.24=h86f0d12_0
  - libdrm=2.4.125=hb03c661_1
  - libedit=3.1.20250104=pl5321h7949ede_0
  - libegl=1.7.0=ha4b6fd6_2
  - libexpat=2.7.1=hecca717_0
  - libffi=3.4.6=h2dba641_1
  - libfreetype=2.14.1=ha770c72_0
  - libfreetype6=2.14.1=h73754d4_0
  - libgcc=15.1.0=h767d61c_5
  - libgcc-ng=15.1.0=h69a702a_5
  - libgfortran=15.1.0=h69a702a_5
  - libgfortran5=15.1.0=hcea5267_5
  - libgl=1.7.0=ha4b6fd6_2
  - libglib=2.86.0=h1fed272_0
  - libglvnd=1.7.0=ha4b6fd6_2
  - libglx=1.7.0=ha4b6fd6_2
  - libgomp=15.1.0=h767d61c_5
  - libhwloc=2.12.1=default_h3d81e11_1000
  - libiconv=1.18=h3b78370_2
  - libjpeg-turbo=3.1.0=hb9d3cd8_0
  - liblapack=3.9.0=20_linux64_mkl
  - libllvm21=21.1.0=hecd9e04_0
  - liblzma=5.8.1=hb9d3cd8_2
  - liblzma-devel=5.8.1=hb9d3cd8_2
  - libnpp=12.2.5.30=he02047a_2
  - libnsl=2.0.1=hb9d3cd8_1
  - libntlm=1.8=hb9d3cd8_0
  - libnvfatbin=12.4.127=he02047a_2
  - libnvjitlink=12.4.127=he02047a_2
  - libnvjpeg=12.3.1.117=he02047a_2
  - libopenblas=0.3.30=pthreads_h94d23a6_2
  - libopengl=1.7.0=ha4b6fd6_2
  - libpciaccess=0.18=hb9d3cd8_0
  - libpng=1.6.50=h421ea60_1
  - libpq=17.6=h3675c94_2
  - libsqlite=3.50.4=h0c1763c_0
  - libstdcxx=15.1.0=h8f9b012_5
  - libstdcxx-ng=15.1.0=h4852527_5
  - libtiff=4.7.0=h8261f1e_6
  - libuuid=2.41.1=he9a06e4_0
  - libwebp-base=1.6.0=hd42ef1d_0
  - libxcb=1.17.0=h8a09558_0
  - libxcrypt=4.4.36=hd590300_1
  - libxkbcommon=1.11.0=he8b52b9_0
  - libxml2=2.13.8=h04c0eec_1
  - libxslt=1.1.43=h7a3aeb2_0
  - libzlib=1.3.1=hb9d3cd8_2
  - llvm-openmp=15.0.7=h0cdce71_0
  - markupsafe=3.0.2=py311h2dc5d0c_1
  - matplotlib=3.10.6=py311h38be061_1
  - matplotlib-base=3.10.6=py311h0f3be63_1
  - mkl=2023.2.0=ha770c72_50498
  - mpc=1.3.1=h24ddda3_1
  - mpfr=4.2.1=h90cbb55_3
  - mpmath=1.3.0=pyhd8ed1ab_1
  - munkres=1.1.4=pyhd8ed1ab_1
  - ncurses=6.5=h2d0b736_3
  - networkx=3.5=pyhe01879c_0
  - numpy=2.3.3=py311h2e04523_0
  - ocl-icd=2.3.3=hb9d3cd8_0
  - opencl-headers=2025.06.13=h5888daf_0
  - openjpeg=2.5.3=h55fea9a_1
  - openldap=2.6.10=he970967_0
  - openssl=3.5.3=h26f9b46_0
  - packaging=25.0=pyh29332c3_1
  - pandas=2.3.2=py311hed34c8f_0
  - pcre2=10.46=h1321c63_0
  - pillow=11.3.0=py311h3df08e7_2
  - pip=25.2=pyh8b19718_0
  - pixman=0.46.4=h54a6638_1
  - psutil=7.1.0=py311h49ec1c0_0
  - pthread-stubs=0.4=hb9d3cd8_1002
  - pycparser=2.22=pyh29332c3_1
  - pyparsing=3.2.4=pyhcf101f3_0
  - pyside6=6.9.2=py311h72d58bf_1
  - pysocks=1.7.1=pyha55dd90_7
  - python=3.11.8=hab00c5b_0_cpython
  - python-dateutil=2.9.0.post0=pyhe01879c_2
  - python-tzdata=2025.2=pyhd8ed1ab_0
  - python_abi=3.11=8_cp311
  - pytorch-cuda=12.4=hc786d27_7
  - pytorch-mutex=1.0=cuda
  - pytz=2025.2=pyhd8ed1ab_0
  - pyyaml=6.0.2=py311h2dc5d0c_2
  - qhull=2020.2=h434a139_5
  - qt6-main=6.9.2=h5bd77bc_1
  - readline=8.2=h8c095d6_2
  - requests=2.32.5=pyhd8ed1ab_0
  - scipy=1.16.2=py311h1e13796_0
  - setuptools=80.9.0=pyhff2d567_0
  - six=1.17.0=pyhe01879c_1
  - tbb=2021.13.0=hb60516a_3
  - tk=8.6.13=noxft_hd72426e_102
  - tornado=6.5.2=py311h49ec1c0_1
  - tqdm=4.67.1=pyhd8ed1ab_1
  - typing_extensions=4.15.0=pyhcf101f3_0
  - tzdata=2025b=h78e105d_0
  - unicodedata2=16.0.0=py311h49ec1c0_1
  - urllib3=2.5.0=pyhd8ed1ab_0
  - wayland=1.24.0=h3e06ad9_0
  - wheel=0.45.1=pyhd8ed1ab_1
  - xcb-util=0.4.1=h4f16b4b_2
  - xcb-util-cursor=0.1.5=hb9d3cd8_0
  - xcb-util-image=0.4.0=hb711507_2
  - xcb-util-keysyms=0.4.1=hb711507_0
  - xcb-util-renderutil=0.3.10=hb711507_0
  - xcb-util-wm=0.4.2=hb711507_0
  - xkeyboard-config=2.45=hb9d3cd8_0
  - xorg-libice=1.1.2=hb9d3cd8_0
  - xorg-libsm=1.2.6=he73a12e_0
  - xorg-libx11=1.8.12=h4f16b4b_0
  - xorg-libxau=1.0.12=hb9d3cd8_0
  - xorg-libxcomposite=0.4.6=hb9d3cd8_2
  - xorg-libxcursor=1.2.3=hb9d3cd8_0
  - xorg-libxdamage=1.1.6=hb9d3cd8_0
  - xorg-libxdmcp=1.1.5=hb9d3cd8_0
  - xorg-libxext=1.3.6=hb9d3cd8_0
  - xorg-libxfixes=6.0.1=hb9d3cd8_0
  - xorg-libxi=1.8.2=hb9d3cd8_0
  - xorg-libxrandr=1.5.4=hb9d3cd8_0
  - xorg-libxrender=0.9.12=hb9d3cd8_0
  - xorg-libxtst=1.2.5=hb9d3cd8_3
  - xorg-libxxf86vm=1.1.6=hb9d3cd8_0
  - xz=5.8.1=hbcc6ac9_2
  - xz-gpl-tools=5.8.1=hbcc6ac9_2
  - xz-tools=5.8.1=hb9d3cd8_2
  - yaml=0.2.5=h280c20c_3
  - zstandard=0.25.0=py311haee01d2_0
  - zstd=1.5.7=hb8e6e7a_2
  - pip:
      - fsspec==2025.9.0
      - hf-xet==1.1.10
      - huggingface-hub==0.23.2
      - nvidia-cublas-cu12==12.1.3.1
      - nvidia-cuda-cupti-cu12==12.1.105
      - nvidia-cuda-nvrtc-cu12==12.1.105
      - nvidia-cuda-runtime-cu12==12.1.105
      - nvidia-cudnn-cu12==8.9.2.26
      - nvidia-cufft-cu12==11.0.2.54
      - nvidia-curand-cu12==10.3.2.106
      - nvidia-cusolver-cu12==11.4.5.107
      - nvidia-cusparse-cu12==12.1.0.106
      - nvidia-nccl-cu12==2.20.5
      - nvidia-nvjitlink-cu12==12.9.86
      - nvidia-nvtx-cu12==12.1.105
      - regex==2025.9.1
      - safetensors==0.4.3
      - sympy==1.13.1
      - tokenizers==0.15.2
      - torch==2.3.0
      - transformers==4.39.3
      - triton==2.3.0
prefix: /exports/eddie/scratch/s2227580/embd_berlin