ApPredict/.github/workflows/ubuntu-tests.yml at main · Chaste/ApPredict · GitHub

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name: Ubuntu ApPredict test suite

on:
  schedule:
    - cron: "0 0 * * *" # every day at midnight.

  pull_request:

  push:
    branches:
      - main

  workflow_dispatch:
    inputs:
      chaste_branch:
        description: "Chaste branch"
        required: false
        type: "string"
        default: "develop"

jobs:
  build-and-test:
    runs-on: ubuntu-22.04

    env:
      CHASTE_TEST_OUTPUT: ${{ github.workspace }}/chaste-test-dir
      chaste_branch: ${{ inputs.chaste_branch || 'develop' }}

    steps:
      - name: Checkout Chaste/${{ env.chaste_branch }}
        uses: actions/checkout@v6
        with:
          repository: Chaste/Chaste
          path: Chaste
          ref: ${{ env.chaste_branch }}

      - name: Checkout ApPredict
        uses: actions/checkout@v6
        with:
          repository: Chaste/ApPredict
          path: Chaste/projects/ApPredict

      - name: Setup directories
        run: |
          mkdir -p build
          mkdir -p ${CHASTE_TEST_OUTPUT}

      - name: Install dependencies
        run: |
          sudo wget -O /usr/share/keyrings/chaste.asc https://chaste.github.io/chaste.asc
          repo="deb [signed-by=/usr/share/keyrings/chaste.asc] https://chaste.github.io/ubuntu jammy/"
          echo "${repo}" | sudo tee /etc/apt/sources.list.d/chaste.list
          sudo apt-get update
          sudo apt-get install -y chaste-dependencies

      - name: Configure
        run: cmake -DCMAKE_BUILD_TYPE=Release ../Chaste
        working-directory: build

      - name: Remove cellml
        run: rm -rf Chaste/projects/ApPredict/src/cellml/

      - name: Configure again # Checks that missing cellml is fetched (#30, #26)
        run: cmake -DCMAKE_BUILD_TYPE=Release ../Chaste
        working-directory: build

      - name: TestChasteBuildInfo
        run: |
          cmake --build . --target TestChasteBuildInfo --parallel $(nproc)
          ctest -V -R TestChasteBuildInfo$
        working-directory: build

      - name: Build ApPredict
        run: cmake --build . --target project_ApPredict --parallel $(nproc)
        working-directory: build

      - name: Run ApPredict test suite
        run: ctest -L ApPredict -j $(nproc) --output-on-failure
        working-directory: build

      - name: Slack notification
        if: ${{ failure() && github.event_name == 'schedule' }}
        uses: slackapi/slack-github-action@v3.0.1
        with:
          method: chat.postMessage
          token: ${{ secrets.SLACK_NOTIFICATIONS_BOT_TOKEN }}
          payload: |
            channel: ${{ secrets.SLACK_CHANNEL_ID }}
            text: "Chaste/ApPredict\nStatus: ${{ job.status }}\nBranch: ${{ github.event.pull_request.html_url || github.event.head_commit.url }}"
            blocks:
              - type: "section"
                text:
                  type: "mrkdwn"
                  text: ":rotating_light: <https://github.com/Chaste/ApPredict|Chaste/ApPredict>\n*Status:* <${{ job.status }}>\n*Branch:* <${{ github.event.pull_request.html_url || github.event.head_commit.url }}>"