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108 lines (107 loc) · 2.75 KB
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# Generated by roxygen2: do not edit by hand
S3method(as.data.frame,lfq_data)
S3method(as_lfq_data,data.frame)
S3method(as_lfq_data,lfq_data)
S3method(autoplot,lfq_fit)
S3method(autoplot,lfq_forecast)
S3method(calibrate,lfq_backtest)
S3method(calibrate,lfq_forecast)
S3method(coef,lfq_fit)
S3method(forecast,lfq_fit)
S3method(logLik,lfq_fit)
S3method(nobs,lfq_fit)
S3method(plot,adaptive_allocation)
S3method(plot,calibration_report)
S3method(plot,evoi)
S3method(plot,fitness_decomposition)
S3method(plot,immune_landscape)
S3method(plot,lfq_prospective)
S3method(print,adaptive_allocation)
S3method(print,calibration_report)
S3method(print,caps_forecast)
S3method(print,evoi)
S3method(print,fitness_decomposition)
S3method(print,immune_landscape)
S3method(print,joint_calibration_report)
S3method(print,lfq_backtest)
S3method(print,lfq_conformal_joint)
S3method(print,lfq_data)
S3method(print,lfq_fit)
S3method(print,lfq_forecast)
S3method(print,lfq_prospective)
S3method(print,surveillance_dashboard)
S3method(summary,adaptive_allocation)
S3method(summary,lfq_fit)
S3method(vcov,lfq_fit)
export(adaptive_design)
export(alert_threshold)
export(as_lfq_data)
export(augment.lfq_fit)
export(autoplot)
export(backtest)
export(calibrate)
export(calibrate_joint)
export(caps_forecast)
export(collapse_lineages)
export(compare_models)
export(conformal_forecast)
export(conformal_forecast_joint)
export(detection_horizon)
export(evaluate_caps)
export(evaluate_prospective)
export(filter_sparse)
export(fit_dms_prior)
export(fit_model)
export(fitness_decomposition)
export(forecast)
export(glance.lfq_fit)
export(growth_advantage)
export(immune_landscape)
export(is_lfq_data)
export(lfq_advantage)
export(lfq_data)
export(lfq_engines)
export(lfq_fit)
export(lfq_forecast)
export(lfq_score)
export(lfq_stan_available)
export(lfq_summary)
export(lfq_version)
export(plot_backtest)
export(read_lineage_counts)
export(recalibrate)
export(register_engine)
export(score_forecasts)
export(selective_pressure)
export(sequencing_power)
export(simulate_dynamics)
export(summarize_emerging)
export(surveillance_dashboard)
export(surveillance_value)
export(tidy.fitness_decomposition)
export(tidy.lfq_fit)
export(unregister_engine)
importFrom(ggplot2,autoplot)
importFrom(rlang,"%||%")
importFrom(rlang,.data)
importFrom(stats,AIC)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,confint)
importFrom(stats,dmultinom)
importFrom(stats,dnorm)
importFrom(stats,glm)
importFrom(stats,logLik)
importFrom(stats,median)
importFrom(stats,nobs)
importFrom(stats,optim)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,residuals)
importFrom(stats,rgamma)
importFrom(stats,rmultinom)
importFrom(stats,setNames)
importFrom(stats,vcov)