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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="preprocessor">#include <iostream></span></div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> </div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span><span class="preprocessor">#include "DGtal/base/Common.h"</span></div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span><span class="preprocessor">#include "DGtal/base/BasicFunctors.h"</span></div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="preprocessor">#include "DGtal/helpers/StdDefs.h"</span></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span><span class="preprocessor">#include "DGtal/io/readers/VolReader.h"</span></div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span><span class="preprocessor">#include "DGtal/io/viewers/PolyscopeViewer.h"</span></div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span><span class="preprocessor">#include "DGtal/io/readers/PointListReader.h"</span></div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span><span class="preprocessor">#include "DGtal/io/readers/MeshReader.h"</span></div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span><span class="preprocessor">#include "DGtal/topology/helpers/Surfaces.h"</span></div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span><span class="preprocessor">#include "DGtal/topology/SurfelAdjacency.h"</span></div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> </div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span><span class="preprocessor">#include "DGtal/io/Color.h"</span></div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span><span class="preprocessor">#include "DGtal/io/colormaps/GradientColorMap.h"</span></div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span><span class="preprocessor">#include "DGtal/io/readers/GenericReader.h"</span></div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span><span class="preprocessor">#ifdef DGTAL_WITH_ITK</span></div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span><span class="preprocessor">#include "DGtal/io/readers/DicomReader.h"</span></div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span><span class="preprocessor">#endif</span></div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> </div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span><span class="preprocessor">#include "DGtal/images/ImageSelector.h"</span></div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> </div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span><span class="comment">// #include "specificClasses/Viewer3DImage.cpp"</span></div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span><span class="preprocessor">#include "CLI11.hpp"</span></div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> </div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> </div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span><span class="keyword">using namespace </span>std;</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span><span class="keyword">using namespace </span><a class="code hl_namespace" href="namespaceDGtal.html">DGtal</a>;</div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span><span class="keyword">using namespace </span>Z3i;</div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> </div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span><span class="keyword">enum</span> TypeSlice {SliceX, SliceY, SliceZ};</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> </div>
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span><span class="keyword">typedef</span> DGtal::functors::Rescaling<DGtal::int64_t ,unsigned char > RescalFCT;</div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span><span class="keyword">typedef</span> DGtal::ImageContainerBySTLVector<DGtal::Z3i::Domain, unsigned char > Image3D;</div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span><span class="keyword">typedef</span> DGtal::ImageContainerBySTLVector<DGtal::Z2i::Domain, unsigned char > Image2D;</div>
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span><span class="keyword">typedef</span> DGtal::ConstImageAdapter<Image3D, Image2D::Domain, DGtal::functors::Projector< DGtal::Z3i::Space>,</div>
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span>Image3D::Value, DGtal::functors::Identity > SliceImageAdapter;</div>
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span><span class="keyword">typedef</span> DGtal::ConstImageAdapter<Image3D, DGtal::Z2i::Domain, DGtal::functors::SliceRotator2D< DGtal::Z3i::Domain >,</div>
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span>Image3D::Value, DGtal::functors::Identity > MyRotatorSliceImageAdapter;</div>
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span><span class="keyword">static</span> DGtal::Z2i::Domain domain2DX;</div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span><span class="keyword">static</span> DGtal::Z2i::Domain domain2DY;</div>
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span><span class="keyword">static</span> DGtal::Z2i::Domain domain2DZ;</div>
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> </div>
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span><span class="keyword">const</span> DGtal::functors::Identity identityFunctor{};</div>
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> </div>
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* texSliceX = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* texSliceY = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* texSliceZ = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> </div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span><span class="keyword">static</span> <span class="keywordtype">int</span> sliceXNum = 0;</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span><span class="keyword">static</span> <span class="keywordtype">int</span> sliceYNum = 0;</div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span><span class="keyword">static</span> <span class="keywordtype">int</span> sliceZNum = 0;</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span><span class="keyword">static</span> <span class="keywordtype">float</span> rotX = 0.0;</div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span><span class="keyword">static</span> <span class="keywordtype">float</span> rotY = 0.0;</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span><span class="keyword">static</span> <span class="keywordtype">float</span> rotZ = 0.0;</div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span><span class="keyword">static</span> <span class="keywordtype">bool</span> showText = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span><span class="keyword">static</span> <span class="keywordtype">double</span> startTime = 0.0;</div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span><span class="keyword">static</span> std::string message = <span class="stringliteral">"Press W to display interface"</span>;</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span><span class="keyword">static</span> TypeSlice mainAxisKeySelect = SliceX;</div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* g_qScalarSliceX = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* g_qScalarSliceY = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* g_qScalarSliceZ = <span class="keyword">nullptr</span>;</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span><span class="keyword">static</span> <span class="keywordtype">bool</span> show_ui = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span><span class="keyword">static</span> polyscope::SurfaceTextureScalarQuantity* g_qScalar[] = {g_qScalarSliceX, g_qScalarSliceY, g_qScalarSliceZ};</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span>Image3D image = Image3D(DGtal::Z3i::Domain());</div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span>DGtal::functors::Projector<DGtal::Z2i::Space> invFunctorX;</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span>DGtal::functors::Projector<DGtal::Z2i::Space> invFunctorY;</div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span>DGtal::functors::Projector<DGtal::Z2i::Space> invFunctorZ;</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> </div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span>polyscope::SurfaceMesh *slicePlaneX;</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span>polyscope::SurfaceMesh *slicePlaneY;</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span>polyscope::SurfaceMesh *slicePlaneZ;</div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> </div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> </div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span>std::vector<glm::vec3></div>
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span>getVertices(<span class="keyword">const</span> MyRotatorSliceImageAdapter &sliceIm,</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keyword">const</span> Z2i::Point &ptInf, <span class="keyword">const</span> Z2i::Point &ptSup,</div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> <span class="keyword">const</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> &func){</div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> Z2i::Point p0 = ptInf;</div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> Z2i::Point p1(ptSup[0], ptInf[1]);</div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> Z2i::Point p2 = ptSup;</div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> Z2i::Point p3(ptInf[0], ptSup[1]);</div>
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> <span class="keywordflow">return</span> {{</div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> { func(p0)[0], func(p0)[1],func(p0)[2]},</div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> { func(p1)[0], func(p1)[1],func(p1)[2]},</div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> { func(p2)[0], func(p2)[1],func(p2)[2]},</div>
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> { func(p3)[0], func(p3)[1],func(p3)[2]}</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> }</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> };</div>
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span>}</div>
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> </div>
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> </div>
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> </div>
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span>polyscope::SurfaceMesh *</div>
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span>initSlices(<span class="keyword">const</span> MyRotatorSliceImageAdapter &sliceIm, <span class="keywordtype">string</span> name, TypeSlice aTypeSlice,</div>
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> <span class="keyword">const</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> &func) {</div>
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> polyscope::SurfaceMesh * res;</div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> <span class="keyword">auto</span> ptInf = sliceIm.sourceDomainPoint(sliceIm.domain().lowerBound());</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> <span class="keyword">auto</span> ptSup = sliceIm.sourceDomainPoint(sliceIm.domain().upperBound());</div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keyword">auto</span> dim = sliceIm.domain().upperBound() - sliceIm.domain().lowerBound();</div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <span class="keyword">auto</span> dimX = dim[0];</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> <span class="keyword">auto</span> dimY = dim[1];</div>
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <span class="keyword">auto</span> maxDim = max(dimX, dimY);</div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> std::vector<glm::vec3> vertices = getVertices(sliceIm, sliceIm.domain().lowerBound(),</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> sliceIm.domain().upperBound(), func);</div>
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> std::vector<std::vector<size_t>> faces = {{0, 1, 2, 3}};</div>
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> res = polyscope::registerSurfaceMesh(name, vertices, faces);</div>
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> std::vector<glm::vec2> param = {</div>
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> {0.0f, 0.0f},</div>
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> {1.0f, 0.0f},</div>
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> {1.0f, 1.0f},</div>
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> {0.0f, 1.0f}</div>
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> };</div>
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> <span class="keyword">auto</span> qParam = res->addParameterizationQuantity(<span class="stringliteral">"param"</span>, param);</div>
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> std::vector<float> valuesTex;</div>
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> y = 0; y< dimY; y++)</div>
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> {</div>
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> x = 0; x< dimX; x++)</div>
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> {</div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> valuesTex.push_back(((<span class="keywordtype">float</span>)sliceIm(Z2i::Point(x,y))));</div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> }</div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> }</div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> </div>
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> <span class="keywordtype">float</span> minV = *std::min_element(valuesTex.begin(), valuesTex.end());</div>
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> <span class="keywordtype">float</span> maxV = *std::max_element(valuesTex.begin(), valuesTex.end());</div>
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="keywordflow">for</span> (<span class="keywordtype">float</span>& v : valuesTex)</div>
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> {</div>
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> v = (v - minV) / (maxV - minV );</div>
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> }</div>
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> g_qScalar[aTypeSlice] = res->addTextureScalarQuantity(<span class="stringliteral">"tScalar"</span>, *qParam, dimX, dimY,</div>
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> valuesTex, polyscope::ImageOrigin::LowerLeft);</div>
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> g_qScalar[aTypeSlice]->setFilterMode(polyscope::FilterMode::Nearest); <span class="comment">// change filter for sampling</span></div>
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> g_qScalar[aTypeSlice]->setEnabled(<span class="keyword">true</span>);</div>
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> <span class="keywordflow">return</span> res;</div>
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span>}</div>
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> </div>
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> </div>
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> </div>
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span><span class="keywordtype">void</span></div>
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span>updateSlices(<span class="keyword">const</span> MyRotatorSliceImageAdapter &sliceIm, <span class="keywordtype">string</span> name, TypeSlice aTypeSlice,</div>
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> <span class="keyword">const</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> &func) {</div>
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> polyscope::SurfaceMesh * sm = polyscope::getSurfaceMesh(name);</div>
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> <span class="keyword">auto</span> ptInf = sliceIm.sourceDomainPoint(sliceIm.domain().lowerBound());</div>
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> <span class="keyword">auto</span> ptSup = sliceIm.sourceDomainPoint(sliceIm.domain().upperBound());</div>
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> <span class="keyword">auto</span> dim = sliceIm.domain().upperBound() - sliceIm.domain().lowerBound();</div>
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> <span class="keyword">auto</span> dimX = dim[0];</div>
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> <span class="keyword">auto</span> dimY = dim[1];</div>
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> std::vector<float> valuesTex;</div>
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> y = 0; y< dimY; y++)</div>
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> {</div>
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> x = 0; x< dimX; x++)</div>
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> {</div>
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> valuesTex.push_back(((<span class="keywordtype">float</span>)sliceIm(Z2i::Point(x,y))));</div>
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> }</div>
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> }</div>
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> </div>
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keywordtype">float</span> minV = *std::min_element(valuesTex.begin(), valuesTex.end());</div>
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> <span class="keywordtype">float</span> maxV = *std::max_element(valuesTex.begin(), valuesTex.end());</div>
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> <span class="keywordflow">for</span> (<span class="keywordtype">float</span>& v : valuesTex)</div>
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> {</div>
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> v = (v - minV) / (maxV - minV );</div>
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> }</div>
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> g_qScalar[aTypeSlice] -> updateData(valuesTex);</div>
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="keyword">auto</span> nV = getVertices(sliceIm, sliceIm.domain().lowerBound(),</div>
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> sliceIm.domain().upperBound(), func);</div>
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> sm->updateVertexPositions(nV);</div>
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> </div>
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span>}</div>
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> </div>
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span><span class="keywordtype">void</span> callbackFaceID() {</div>
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> ImGuiIO& io = ImGui::GetIO();</div>
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> <span class="keyword">auto</span> iDom = image.domain();</div>
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keywordtype">bool</span> needRedisSX = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="keywordtype">bool</span> needRedisSY = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> <span class="keywordtype">bool</span> needRedisSZ = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> </div>
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_W))</div>
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> {</div>
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> show_ui = !show_ui;</div>
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> }</div>
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> <span class="keywordtype">bool</span> updateSlice = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_X))</div>
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> {</div>
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> mainAxisKeySelect = TypeSlice::SliceX;</div>
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> message = <span class="stringliteral">"Slice X selected"</span>;</div>
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> startTime = ImGui::GetTime();</div>
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> showText = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> }</div>
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"> 285</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_Y))</div>
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> {</div>
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> mainAxisKeySelect = TypeSlice::SliceY;</div>
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> message = <span class="stringliteral">"Slice Y selected"</span>;</div>
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> startTime = ImGui::GetTime();</div>
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> showText = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> }</div>
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_Z))</div>
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> {</div>
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> mainAxisKeySelect = TypeSlice::SliceZ;</div>
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> message = <span class="stringliteral">"Slice Z selected"</span>;</div>
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> startTime = ImGui::GetTime();</div>
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> showText = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> }</div>
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> </div>
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_UpArrow))</div>
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> {</div>
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> <span class="keywordflow">if</span> (mainAxisKeySelect == TypeSlice::SliceX)</div>
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> {</div>
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> <span class="keywordflow">if</span> (!io.KeyShift)</div>
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> sliceXNum++;</div>
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> rotX += 0.01;</div>
<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> needRedisSX = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> }</div>
<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span> <span class="keywordflow">if</span> (mainAxisKeySelect == TypeSlice::SliceY)</div>
<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"> 311</span> {</div>
<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"> 312</span> <span class="keywordflow">if</span> (!io.KeyShift)</div>
<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> sliceYNum++;</div>
<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"> 314</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"> 315</span> rotY += 0.01;</div>
<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> needRedisSY = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> }</div>
<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"> 318</span> <span class="keywordflow">if</span> (mainAxisKeySelect == TypeSlice::SliceZ)</div>
<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"> 319</span> {</div>
<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span> <span class="keywordflow">if</span> (!io.KeyShift)</div>
<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"> 321</span> sliceZNum++;</div>
<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"> 322</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"> 323</span> rotZ += 0.01;</div>
<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span> needRedisSZ = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00325" name="l00325"></a><span class="lineno"> 325</span> }</div>
<div class="line"><a id="l00326" name="l00326"></a><span class="lineno"> 326</span> }</div>
<div class="line"><a id="l00327" name="l00327"></a><span class="lineno"> 327</span> <span class="keywordflow">if</span> (ImGui::IsKeyPressed(ImGuiKey_DownArrow))</div>
<div class="line"><a id="l00328" name="l00328"></a><span class="lineno"> 328</span> {</div>
<div class="line"><a id="l00329" name="l00329"></a><span class="lineno"> 329</span> <span class="keywordflow">if</span> (mainAxisKeySelect == TypeSlice::SliceX)</div>
<div class="line"><a id="l00330" name="l00330"></a><span class="lineno"> 330</span> {</div>
<div class="line"><a id="l00331" name="l00331"></a><span class="lineno"> 331</span> <span class="keywordflow">if</span> (!io.KeyShift)</div>
<div class="line"><a id="l00332" name="l00332"></a><span class="lineno"> 332</span> sliceXNum--;</div>
<div class="line"><a id="l00333" name="l00333"></a><span class="lineno"> 333</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"> 334</span> rotX -= 0.01;</div>
<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span> needRedisSX = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> }</div>
<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> <span class="keywordflow">if</span> (mainAxisKeySelect == TypeSlice::SliceY)</div>
<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> {</div>
<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> <span class="keywordflow">if</span> (!io.KeyShift)</div>
<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> sliceYNum--;</div>
<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> rotY -= 0.01;</div>
<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> needRedisSY = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> }</div>
<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> <span class="keywordflow">if</span> (mainAxisKeySelect == TypeSlice::SliceZ)</div>
<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"> 346</span> {</div>
<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> <span class="keywordflow">if</span> (!io.KeyShift)</div>
<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> sliceZNum--;</div>
<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"> 349</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"> 350</span> rotZ -= 0.01;</div>
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> needRedisSZ = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span> }</div>
<div class="line"><a id="l00353" name="l00353"></a><span class="lineno"> 353</span> }</div>
<div class="line"><a id="l00354" name="l00354"></a><span class="lineno"> 354</span> </div>
<div class="line"><a id="l00355" name="l00355"></a><span class="lineno"> 355</span> </div>
<div class="line"><a id="l00356" name="l00356"></a><span class="lineno"> 356</span> <span class="keywordflow">if</span> (show_ui){</div>
<div class="line"><a id="l00357" name="l00357"></a><span class="lineno"> 357</span> <span class="keywordtype">float</span> totalWidth = ImGui::GetContentRegionAvail().x;</div>
<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> <span class="keywordtype">float</span> sliderWidth = (totalWidth - ImGui::GetStyle().ItemSpacing.x) * 0.5f;</div>
<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> ImGui::Begin(<span class="stringliteral">"Editing tools"</span>);</div>
<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> ImGui::Text(<span class="stringliteral">"Slice X :"</span>);</div>
<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> ImGui::PushItemWidth(sliderWidth);</div>
<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"> 362</span> <span class="keywordflow">if</span> (ImGui::SliderInt(<span class="stringliteral">"##x axis"</span>, &sliceXNum, iDom.lowerBound()[0],</div>
<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"> 363</span> iDom.upperBound()[0], <span class="stringliteral">"slice X %i"</span>))</div>
<div class="line"><a id="l00364" name="l00364"></a><span class="lineno"> 364</span> {</div>
<div class="line"><a id="l00365" name="l00365"></a><span class="lineno"> 365</span> needRedisSX = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"> 366</span> }</div>
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> ImGui::SameLine();</div>
<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span> <span class="keywordflow">if</span> (ImGui::SliderFloat(<span class="stringliteral">"##rotateX"</span>, &rotX, 0, 3.14, <span class="stringliteral">"angle = %f"</span>))</div>
<div class="line"><a id="l00369" name="l00369"></a><span class="lineno"> 369</span> {</div>
<div class="line"><a id="l00370" name="l00370"></a><span class="lineno"> 370</span> needRedisSX = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00371" name="l00371"></a><span class="lineno"> 371</span> }</div>
<div class="line"><a id="l00372" name="l00372"></a><span class="lineno"> 372</span> ImGui::PopItemWidth();</div>
<div class="line"><a id="l00373" name="l00373"></a><span class="lineno"> 373</span> ImGui::PushItemWidth(sliderWidth);</div>
<div class="line"><a id="l00374" name="l00374"></a><span class="lineno"> 374</span> </div>
<div class="line"><a id="l00375" name="l00375"></a><span class="lineno"> 375</span> ImGui::Text(<span class="stringliteral">"Slice Y :"</span>);</div>
<div class="line"><a id="l00376" name="l00376"></a><span class="lineno"> 376</span> <span class="keywordflow">if</span> (ImGui::SliderInt(<span class="stringliteral">"##slice y"</span>, &sliceYNum, iDom.lowerBound()[1],</div>
<div class="line"><a id="l00377" name="l00377"></a><span class="lineno"> 377</span> iDom.upperBound()[1], <span class="stringliteral">"slice Y %i"</span>))</div>
<div class="line"><a id="l00378" name="l00378"></a><span class="lineno"> 378</span> {</div>
<div class="line"><a id="l00379" name="l00379"></a><span class="lineno"> 379</span> needRedisSY = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00380" name="l00380"></a><span class="lineno"> 380</span> }</div>
<div class="line"><a id="l00381" name="l00381"></a><span class="lineno"> 381</span> ImGui::SameLine();</div>
<div class="line"><a id="l00382" name="l00382"></a><span class="lineno"> 382</span> <span class="keywordflow">if</span> (ImGui::SliderFloat(<span class="stringliteral">"##rotateY"</span>, &rotY, 0, 3.14, <span class="stringliteral">"angle = %f"</span>))</div>
<div class="line"><a id="l00383" name="l00383"></a><span class="lineno"> 383</span> {</div>
<div class="line"><a id="l00384" name="l00384"></a><span class="lineno"> 384</span> needRedisSY = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00385" name="l00385"></a><span class="lineno"> 385</span> }</div>
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"> 386</span> ImGui::PopItemWidth();</div>
<div class="line"><a id="l00387" name="l00387"></a><span class="lineno"> 387</span> ImGui::PushItemWidth(sliderWidth);</div>
<div class="line"><a id="l00388" name="l00388"></a><span class="lineno"> 388</span> ImGui::Text(<span class="stringliteral">"Slice Z :"</span>);</div>
<div class="line"><a id="l00389" name="l00389"></a><span class="lineno"> 389</span> <span class="keywordflow">if</span> (ImGui::SliderInt(<span class="stringliteral">"##slice z"</span>, &sliceZNum, iDom.lowerBound()[2],</div>
<div class="line"><a id="l00390" name="l00390"></a><span class="lineno"> 390</span> iDom.upperBound()[2], <span class="stringliteral">"slice Z %i"</span>))</div>
<div class="line"><a id="l00391" name="l00391"></a><span class="lineno"> 391</span> {</div>
<div class="line"><a id="l00392" name="l00392"></a><span class="lineno"> 392</span> needRedisSZ = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00393" name="l00393"></a><span class="lineno"> 393</span> }</div>
<div class="line"><a id="l00394" name="l00394"></a><span class="lineno"> 394</span> ImGui::SameLine();</div>
<div class="line"><a id="l00395" name="l00395"></a><span class="lineno"> 395</span> <span class="keywordflow">if</span> (ImGui::SliderFloat(<span class="stringliteral">"##rotateZ"</span>, &rotZ, 0, 3.14, <span class="stringliteral">"angle = %f"</span>))</div>
<div class="line"><a id="l00396" name="l00396"></a><span class="lineno"> 396</span> {</div>
<div class="line"><a id="l00397" name="l00397"></a><span class="lineno"> 397</span> needRedisSZ = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00398" name="l00398"></a><span class="lineno"> 398</span> }</div>
<div class="line"><a id="l00399" name="l00399"></a><span class="lineno"> 399</span> ImGui::PopItemWidth();</div>
<div class="line"><a id="l00400" name="l00400"></a><span class="lineno"> 400</span> ImGui::Separator();</div>
<div class="line"><a id="l00401" name="l00401"></a><span class="lineno"> 401</span> ImGui::Text(<span class="stringliteral">"Polyscope interface:"</span>);</div>
<div class="line"><a id="l00402" name="l00402"></a><span class="lineno"> 402</span> </div>
<div class="line"><a id="l00403" name="l00403"></a><span class="lineno"> 403</span> <span class="keywordflow">if</span> (ImGui::Button(<span class="stringliteral">"show "</span>))</div>
<div class="line"><a id="l00404" name="l00404"></a><span class="lineno"> 404</span> {</div>
<div class="line"><a id="l00405" name="l00405"></a><span class="lineno"> 405</span> polyscope::options::buildGui=<span class="keyword">true</span>;</div>
<div class="line"><a id="l00406" name="l00406"></a><span class="lineno"> 406</span> }</div>
<div class="line"><a id="l00407" name="l00407"></a><span class="lineno"> 407</span> ImGui::SameLine();</div>
<div class="line"><a id="l00408" name="l00408"></a><span class="lineno"> 408</span> <span class="keywordflow">if</span> (ImGui::Button(<span class="stringliteral">"hide"</span>))</div>
<div class="line"><a id="l00409" name="l00409"></a><span class="lineno"> 409</span> {</div>
<div class="line"><a id="l00410" name="l00410"></a><span class="lineno"> 410</span> polyscope::options::buildGui=<span class="keyword">false</span>;</div>
<div class="line"><a id="l00411" name="l00411"></a><span class="lineno"> 411</span> }</div>
<div class="line"><a id="l00412" name="l00412"></a><span class="lineno"> 412</span> ImGui::Separator();</div>
<div class="line"><a id="l00413" name="l00413"></a><span class="lineno"> 413</span> ImGui::Text(<span class="stringliteral">"Touches:"</span>);</div>
<div class="line"><a id="l00414" name="l00414"></a><span class="lineno"> 414</span> ImGui::Text(<span class="stringliteral">"X: select X slice plane"</span>);</div>
<div class="line"><a id="l00415" name="l00415"></a><span class="lineno"> 415</span> ImGui::Text(<span class="stringliteral">"Y: select Y slice plane"</span>);</div>
<div class="line"><a id="l00416" name="l00416"></a><span class="lineno"> 416</span> ImGui::Text(<span class="stringliteral">"Z: select Z slice plane"</span>);</div>
<div class="line"><a id="l00417" name="l00417"></a><span class="lineno"> 417</span> ImGui::Text(<span class="stringliteral">"UP/DOWN arrow : Move selected slice (+SHIFT to rotate)"</span>);</div>
<div class="line"><a id="l00418" name="l00418"></a><span class="lineno"> 418</span> ImGui::End();</div>
<div class="line"><a id="l00419" name="l00419"></a><span class="lineno"> 419</span> }</div>
<div class="line"><a id="l00420" name="l00420"></a><span class="lineno"> 420</span> <span class="keywordflow">if</span> (needRedisSX)</div>
<div class="line"><a id="l00421" name="l00421"></a><span class="lineno"> 421</span> {</div>
<div class="line"><a id="l00422" name="l00422"></a><span class="lineno"> 422</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> aSliceFunctorX(0, iDom, sliceXNum, 2, rotX, <span class="keyword">false</span> );</div>
<div class="line"><a id="l00423" name="l00423"></a><span class="lineno"> 423</span> MyRotatorSliceImageAdapter sliceImageX( image, domain2DX, aSliceFunctorX, identityFunctor );</div>
<div class="line"><a id="l00424" name="l00424"></a><span class="lineno"> 424</span> updateSlices(sliceImageX, <span class="stringliteral">"slicex"</span>, TypeSlice::SliceX, aSliceFunctorX);</div>
<div class="line"><a id="l00425" name="l00425"></a><span class="lineno"> 425</span> }</div>
<div class="line"><a id="l00426" name="l00426"></a><span class="lineno"> 426</span> <span class="keywordflow">if</span> (needRedisSY)</div>
<div class="line"><a id="l00427" name="l00427"></a><span class="lineno"> 427</span> {</div>
<div class="line"><a id="l00428" name="l00428"></a><span class="lineno"> 428</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> aSliceFunctorY(1, iDom, sliceYNum, 2, rotY, <span class="keyword">false</span> );</div>
<div class="line"><a id="l00429" name="l00429"></a><span class="lineno"> 429</span> MyRotatorSliceImageAdapter sliceImageY( image, domain2DY, aSliceFunctorY, identityFunctor );</div>
<div class="line"><a id="l00430" name="l00430"></a><span class="lineno"> 430</span> updateSlices(sliceImageY, <span class="stringliteral">"slicey"</span>, TypeSlice::SliceY, aSliceFunctorY);</div>
<div class="line"><a id="l00431" name="l00431"></a><span class="lineno"> 431</span> }</div>
<div class="line"><a id="l00432" name="l00432"></a><span class="lineno"> 432</span> <span class="keywordflow">if</span> (needRedisSZ)</div>
<div class="line"><a id="l00433" name="l00433"></a><span class="lineno"> 433</span> {</div>
<div class="line"><a id="l00434" name="l00434"></a><span class="lineno"> 434</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> aSliceFunctorZ(2, iDom, sliceZNum, 0, rotZ, <span class="keyword">false</span> );</div>
<div class="line"><a id="l00435" name="l00435"></a><span class="lineno"> 435</span> MyRotatorSliceImageAdapter sliceImageZ( image, domain2DZ, aSliceFunctorZ, identityFunctor );</div>
<div class="line"><a id="l00436" name="l00436"></a><span class="lineno"> 436</span> updateSlices(sliceImageZ, <span class="stringliteral">"slicez"</span>, TypeSlice::SliceZ, aSliceFunctorZ);</div>
<div class="line"><a id="l00437" name="l00437"></a><span class="lineno"> 437</span> }</div>
<div class="line"><a id="l00438" name="l00438"></a><span class="lineno"> 438</span> <span class="keywordflow">if</span> (showText)</div>
<div class="line"><a id="l00439" name="l00439"></a><span class="lineno"> 439</span> {</div>
<div class="line"><a id="l00440" name="l00440"></a><span class="lineno"> 440</span> ImVec2 pos(20, 20);</div>
<div class="line"><a id="l00441" name="l00441"></a><span class="lineno"> 441</span> ImDrawList* drawList = ImGui::GetBackgroundDrawList();</div>
<div class="line"><a id="l00442" name="l00442"></a><span class="lineno"> 442</span> drawList->AddText(pos, IM_COL32(25, 25, 255, 255), message.c_str());</div>
<div class="line"><a id="l00443" name="l00443"></a><span class="lineno"> 443</span> <span class="keywordflow">if</span> (ImGui::GetTime() - startTime > 10.0 )</div>
<div class="line"><a id="l00444" name="l00444"></a><span class="lineno"> 444</span> {</div>
<div class="line"><a id="l00445" name="l00445"></a><span class="lineno"> 445</span> showText = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00446" name="l00446"></a><span class="lineno"> 446</span> }</div>
<div class="line"><a id="l00447" name="l00447"></a><span class="lineno"> 447</span> </div>
<div class="line"><a id="l00448" name="l00448"></a><span class="lineno"> 448</span> }</div>
<div class="line"><a id="l00449" name="l00449"></a><span class="lineno"> 449</span>}</div>
<div class="line"><a id="l00450" name="l00450"></a><span class="lineno"> 450</span> </div>
<div class="line"><a id="l00451" name="l00451"></a><span class="lineno"> 451</span> </div>
<div class="line"><a id="l00452" name="l00452"></a><span class="lineno"> 452</span> </div>
<div class="line"><a id="l00453" name="l00453"></a><span class="lineno"> 453</span><span class="keywordtype">int</span> main( <span class="keywordtype">int</span> argc, <span class="keywordtype">char</span>** argv )</div>
<div class="line"><a id="l00454" name="l00454"></a><span class="lineno"> 454</span>{</div>
<div class="line"><a id="l00455" name="l00455"></a><span class="lineno"> 455</span> </div>
<div class="line"><a id="l00456" name="l00456"></a><span class="lineno"> 456</span> </div>
<div class="line"><a id="l00457" name="l00457"></a><span class="lineno"> 457</span> </div>
<div class="line"><a id="l00458" name="l00458"></a><span class="lineno"> 458</span> <span class="comment">// parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a id="l00459" name="l00459"></a><span class="lineno"> 459</span> CLI::App app;</div>
<div class="line"><a id="l00460" name="l00460"></a><span class="lineno"> 460</span> std::string inputFileName;</div>
<div class="line"><a id="l00461" name="l00461"></a><span class="lineno"> 461</span> std::string inputFileNameSDP;</div>
<div class="line"><a id="l00462" name="l00462"></a><span class="lineno"> 462</span> std::string inputFileNameMesh;</div>
<div class="line"><a id="l00463" name="l00463"></a><span class="lineno"> 463</span> </div>
<div class="line"><a id="l00464" name="l00464"></a><span class="lineno"> 464</span> DGtal::int64_t rescaleInputMin {0};</div>
<div class="line"><a id="l00465" name="l00465"></a><span class="lineno"> 465</span> DGtal::int64_t rescaleInputMax {255};</div>
<div class="line"><a id="l00466" name="l00466"></a><span class="lineno"> 466</span> <span class="keywordtype">bool</span> grid {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00467" name="l00467"></a><span class="lineno"> 467</span> <span class="keywordtype">bool</span> intergrid {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00468" name="l00468"></a><span class="lineno"> 468</span> <span class="keywordtype">bool</span> emptyMode {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00469" name="l00469"></a><span class="lineno"> 469</span> <span class="keywordtype">bool</span> displayDigitalSurface {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00470" name="l00470"></a><span class="lineno"> 470</span> <span class="keywordtype">bool</span> thresholdImage {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00471" name="l00471"></a><span class="lineno"> 471</span> <span class="keywordtype">bool</span> colorizeCC {<span class="keyword">false</span>};</div>
<div class="line"><a id="l00472" name="l00472"></a><span class="lineno"> 472</span> <span class="keywordtype">int</span> thresholdMin {0};</div>
<div class="line"><a id="l00473" name="l00473"></a><span class="lineno"> 473</span> <span class="keywordtype">int</span> thresholdMax {255};</div>
<div class="line"><a id="l00474" name="l00474"></a><span class="lineno"> 474</span> std::vector<unsigned int> vectSDPIndex {0,1,2};</div>
<div class="line"><a id="l00475" name="l00475"></a><span class="lineno"> 475</span> std::vector<unsigned int> colorSDP;</div>
<div class="line"><a id="l00476" name="l00476"></a><span class="lineno"> 476</span> std::vector<unsigned int> colorMesh;</div>
<div class="line"><a id="l00477" name="l00477"></a><span class="lineno"> 477</span> </div>
<div class="line"><a id="l00478" name="l00478"></a><span class="lineno"> 478</span> <span class="keywordtype">float</span> sx {1.0};</div>
<div class="line"><a id="l00479" name="l00479"></a><span class="lineno"> 479</span> <span class="keywordtype">float</span> sy {1.0};</div>
<div class="line"><a id="l00480" name="l00480"></a><span class="lineno"> 480</span> <span class="keywordtype">float</span> sz {1.0};</div>
<div class="line"><a id="l00481" name="l00481"></a><span class="lineno"> 481</span> <span class="keywordtype">double</span> ballRadius = {0.0};</div>
<div class="line"><a id="l00482" name="l00482"></a><span class="lineno"> 482</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> transp {255};</div>
<div class="line"><a id="l00483" name="l00483"></a><span class="lineno"> 483</span> </div>
<div class="line"><a id="l00484" name="l00484"></a><span class="lineno"> 484</span> </div>
<div class="line"><a id="l00485" name="l00485"></a><span class="lineno"> 485</span> app.description(<span class="stringliteral">"Displays volume file as a voxel set by using PolyscopeViewer\n 3dImageViewer $DGtal/examples/samples/lobster.vol --thresholdImage -m 180"</span>);</div>
<div class="line"><a id="l00486" name="l00486"></a><span class="lineno"> 486</span> </div>
<div class="line"><a id="l00487" name="l00487"></a><span class="lineno"> 487</span> app.add_option(<span class="stringliteral">"-i,--input,1"</span>, inputFileName, <span class="stringliteral">"vol file (.vol, .longvol .p3d, .pgm3d and if DGTAL_WITH_ITK is selected: dicom, dcm, mha, mhd). For longvol, dicom, dcm, mha or mhd formats, the input values are linearly scaled between 0 and 255."</span> )</div>
<div class="line"><a id="l00488" name="l00488"></a><span class="lineno"> 488</span> ->required()</div>
<div class="line"><a id="l00489" name="l00489"></a><span class="lineno"> 489</span> ->check(CLI::ExistingFile);</div>
<div class="line"><a id="l00490" name="l00490"></a><span class="lineno"> 490</span> </div>
<div class="line"><a id="l00491" name="l00491"></a><span class="lineno"> 491</span> app.add_flag(<span class="stringliteral">"--grid"</span>, grid , <span class="stringliteral">"draw slice images using grid mode."</span>);</div>
<div class="line"><a id="l00492" name="l00492"></a><span class="lineno"> 492</span> app.add_flag(<span class="stringliteral">"--intergrid"</span>, grid , <span class="stringliteral">"draw slice images using inter grid mode."</span>);</div>
<div class="line"><a id="l00493" name="l00493"></a><span class="lineno"> 493</span> app.add_flag(<span class="stringliteral">"--emptyMode"</span>, emptyMode,<span class="stringliteral">"remove the default boundingbox display."</span>);</div>
<div class="line"><a id="l00494" name="l00494"></a><span class="lineno"> 494</span> app.add_flag(<span class="stringliteral">"--thresholdImage"</span>, thresholdImage,<span class="stringliteral">"threshold the image to define binary shape"</span>);</div>
<div class="line"><a id="l00495" name="l00495"></a><span class="lineno"> 495</span> app.add_option(<span class="stringliteral">"--thresholdMin"</span>, thresholdMin, <span class="stringliteral">"threshold min to define binary shape"</span>);</div>
<div class="line"><a id="l00496" name="l00496"></a><span class="lineno"> 496</span> app.add_option(<span class="stringliteral">"--thresholdMax"</span>, thresholdMax, <span class="stringliteral">"threshold maw to define binary shape"</span>);</div>
<div class="line"><a id="l00497" name="l00497"></a><span class="lineno"> 497</span> app.add_option(<span class="stringliteral">"--displaySDP,s"</span>,inputFileNameSDP, <span class="stringliteral">"display a set of discrete points (.sdp)"</span> );</div>
<div class="line"><a id="l00498" name="l00498"></a><span class="lineno"> 498</span> app.add_option(<span class="stringliteral">"--SDPindex"</span>, vectSDPIndex, <span class="stringliteral">"specify the sdp index."</span>)</div>
<div class="line"><a id="l00499" name="l00499"></a><span class="lineno"> 499</span> ->expected(3);</div>
<div class="line"><a id="l00500" name="l00500"></a><span class="lineno"> 500</span> app.add_option(<span class="stringliteral">"--SDPball"</span>,ballRadius, <span class="stringliteral">"use balls to display a set of discrete points (if not set to 0 and used with displaySDP option)."</span>);</div>
<div class="line"><a id="l00501" name="l00501"></a><span class="lineno"> 501</span> </div>
<div class="line"><a id="l00502" name="l00502"></a><span class="lineno"> 502</span> app.add_option(<span class="stringliteral">"--displayMesh"</span>, inputFileNameMesh, <span class="stringliteral">"display a Mesh given in OFF or OFS format."</span>);</div>
<div class="line"><a id="l00503" name="l00503"></a><span class="lineno"> 503</span> app.add_flag(<span class="stringliteral">"--displayDigitalSurface"</span>,displayDigitalSurface, <span class="stringliteral">"display the digital surface instead of display all the set of voxels (used with thresholdImage or displaySDP options)"</span> );</div>
<div class="line"><a id="l00504" name="l00504"></a><span class="lineno"> 504</span> </div>
<div class="line"><a id="l00505" name="l00505"></a><span class="lineno"> 505</span> app.add_flag(<span class="stringliteral">"--colorizeCC"</span>, colorizeCC, <span class="stringliteral">"colorize each Connected Components of the surface displayed by displayDigitalSurface option."</span>);</div>
<div class="line"><a id="l00506" name="l00506"></a><span class="lineno"> 506</span> app.add_option(<span class="stringliteral">"--colorSDP,-c"</span>, colorSDP, <span class="stringliteral">"set the color discrete points: r g b a "</span>)</div>
<div class="line"><a id="l00507" name="l00507"></a><span class="lineno"> 507</span> ->expected(4);</div>
<div class="line"><a id="l00508" name="l00508"></a><span class="lineno"> 508</span> app.add_option(<span class="stringliteral">"--colorMesh"</span>, colorMesh, <span class="stringliteral">"set the color of Mesh (given from displayMesh option) : r g b a "</span>)</div>
<div class="line"><a id="l00509" name="l00509"></a><span class="lineno"> 509</span> ->expected(4);</div>
<div class="line"><a id="l00510" name="l00510"></a><span class="lineno"> 510</span> </div>
<div class="line"><a id="l00511" name="l00511"></a><span class="lineno"> 511</span> app.add_option(<span class="stringliteral">"--scaleX,-x"</span>, sx, <span class="stringliteral">"set the scale value in the X direction"</span> );</div>
<div class="line"><a id="l00512" name="l00512"></a><span class="lineno"> 512</span> app.add_option(<span class="stringliteral">"--scaleY,-y"</span>, sy, <span class="stringliteral">"set the scale value in the Y direction"</span> );</div>
<div class="line"><a id="l00513" name="l00513"></a><span class="lineno"> 513</span> app.add_option(<span class="stringliteral">"--scaleZ,-z"</span>, sy, <span class="stringliteral">"set the scale value in the Z direction"</span> );</div>
<div class="line"><a id="l00514" name="l00514"></a><span class="lineno"> 514</span> app.add_option(<span class="stringliteral">"--rescaleInputMin"</span>,rescaleInputMin, <span class="stringliteral">"min value used to rescale the input intensity (to avoid basic cast into 8 bits image)."</span> );</div>
<div class="line"><a id="l00515" name="l00515"></a><span class="lineno"> 515</span> app.add_option(<span class="stringliteral">"--rescaleInputMax"</span>,rescaleInputMax, <span class="stringliteral">"max value used to rescale the input intensity (to avoid basic cast into 8 bits image)."</span> );</div>
<div class="line"><a id="l00516" name="l00516"></a><span class="lineno"> 516</span> app.add_option(<span class="stringliteral">"--transparency,-t"</span>,transp, <span class="stringliteral">"change the default transparency"</span> );</div>
<div class="line"><a id="l00517" name="l00517"></a><span class="lineno"> 517</span> </div>
<div class="line"><a id="l00518" name="l00518"></a><span class="lineno"> 518</span> </div>
<div class="line"><a id="l00519" name="l00519"></a><span class="lineno"> 519</span> app.get_formatter()->column_width(40);</div>
<div class="line"><a id="l00520" name="l00520"></a><span class="lineno"> 520</span> CLI11_PARSE(app, argc, argv);</div>
<div class="line"><a id="l00521" name="l00521"></a><span class="lineno"> 521</span> <span class="comment">// END parse command line using CLI ----------------------------------------------</span></div>
<div class="line"><a id="l00522" name="l00522"></a><span class="lineno"> 522</span> stringstream s;</div>
<div class="line"><a id="l00523" name="l00523"></a><span class="lineno"> 523</span> s << <span class="stringliteral">"3dImageViewer - DGtalTools: "</span>;</div>
<div class="line"><a id="l00524" name="l00524"></a><span class="lineno"> 524</span> <span class="keywordtype">string</span> name = inputFileName.substr(inputFileName.find_last_of(<span class="stringliteral">"/"</span>)+1,inputFileName.size()) ;</div>
<div class="line"><a id="l00525" name="l00525"></a><span class="lineno"> 525</span> s << <span class="stringliteral">" "</span> << name << <span class="stringliteral">" (W key to display settings)"</span>;</div>
<div class="line"><a id="l00526" name="l00526"></a><span class="lineno"> 526</span> polyscope::options::programName = s.str();</div>
<div class="line"><a id="l00527" name="l00527"></a><span class="lineno"> 527</span> polyscope::options::buildGui=<span class="keyword">false</span>;</div>
<div class="line"><a id="l00528" name="l00528"></a><span class="lineno"> 528</span> polyscope::options::groundPlaneMode = polyscope::GroundPlaneMode::None;</div>
<div class="line"><a id="l00529" name="l00529"></a><span class="lineno"> 529</span> polyscope::view::setNavigateStyle(polyscope::NavigateStyle::Free);</div>
<div class="line"><a id="l00530" name="l00530"></a><span class="lineno"> 530</span> PolyscopeViewer<> viewer;</div>
<div class="line"><a id="l00531" name="l00531"></a><span class="lineno"> 531</span> <span class="keywordtype">string</span> extension = inputFileName.substr(inputFileName.find_last_of(<span class="stringliteral">"."</span>) + 1);</div>
<div class="line"><a id="l00532" name="l00532"></a><span class="lineno"> 532</span> startTime = ImGui::GetTime();</div>
<div class="line"><a id="l00533" name="l00533"></a><span class="lineno"> 533</span> invFunctorX.initRemoveOneDim(0);</div>
<div class="line"><a id="l00534" name="l00534"></a><span class="lineno"> 534</span> invFunctorY.initRemoveOneDim(1);</div>
<div class="line"><a id="l00535" name="l00535"></a><span class="lineno"> 535</span> invFunctorZ.initRemoveOneDim(2);</div>
<div class="line"><a id="l00536" name="l00536"></a><span class="lineno"> 536</span> </div>
<div class="line"><a id="l00537" name="l00537"></a><span class="lineno"> 537</span> image = GenericReader< Image3D >::importWithValueFunctor( inputFileName,RescalFCT(rescaleInputMin,</div>
<div class="line"><a id="l00538" name="l00538"></a><span class="lineno"> 538</span> rescaleInputMax,</div>
<div class="line"><a id="l00539" name="l00539"></a><span class="lineno"> 539</span> 0,</div>
<div class="line"><a id="l00540" name="l00540"></a><span class="lineno"> 540</span> 255));</div>
<div class="line"><a id="l00541" name="l00541"></a><span class="lineno"> 541</span> Domain domain = image.domain();</div>
<div class="line"><a id="l00542" name="l00542"></a><span class="lineno"> 542</span> domain2DX = DGtal::Z2i::Domain(invFunctorX(image.domain().lowerBound()),</div>
<div class="line"><a id="l00543" name="l00543"></a><span class="lineno"> 543</span> invFunctorX(image.domain().upperBound()));</div>
<div class="line"><a id="l00544" name="l00544"></a><span class="lineno"> 544</span> domain2DY = DGtal::Z2i::Domain(invFunctorY(image.domain().lowerBound()),</div>
<div class="line"><a id="l00545" name="l00545"></a><span class="lineno"> 545</span> invFunctorY(image.domain().upperBound()));</div>
<div class="line"><a id="l00546" name="l00546"></a><span class="lineno"> 546</span> domain2DZ = DGtal::Z2i::Domain(invFunctorZ(image.domain().lowerBound()),</div>
<div class="line"><a id="l00547" name="l00547"></a><span class="lineno"> 547</span> invFunctorZ(image.domain().upperBound()));</div>
<div class="line"><a id="l00548" name="l00548"></a><span class="lineno"> 548</span> </div>
<div class="line"><a id="l00549" name="l00549"></a><span class="lineno"> 549</span> trace.info() << <span class="stringliteral">"Image loaded: "</span><<image<< std::endl;</div>
<div class="line"><a id="l00550" name="l00550"></a><span class="lineno"> 550</span> </div>
<div class="line"><a id="l00551" name="l00551"></a><span class="lineno"> 551</span> <span class="comment">// Used to display 3D surface</span></div>
<div class="line"><a id="l00552" name="l00552"></a><span class="lineno"> 552</span> Z3i::DigitalSet set3d(domain);</div>
<div class="line"><a id="l00553" name="l00553"></a><span class="lineno"> 553</span> </div>
<div class="line"><a id="l00554" name="l00554"></a><span class="lineno"> 554</span> <span class="keywordflow">if</span>(thresholdImage){</div>
<div class="line"><a id="l00555" name="l00555"></a><span class="lineno"> 555</span> viewer.newCubeList(<span class="stringliteral">"Threshold image"</span>);</div>
<div class="line"><a id="l00556" name="l00556"></a><span class="lineno"> 556</span> viewer.allowReuseList = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00557" name="l00557"></a><span class="lineno"> 557</span> <span class="keywordflow">for</span>(Domain::ConstIterator it = domain.begin(), itend=domain.end(); it!=itend; ++it){</div>
<div class="line"><a id="l00558" name="l00558"></a><span class="lineno"> 558</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> val= image( (*it) );</div>
<div class="line"><a id="l00559" name="l00559"></a><span class="lineno"> 559</span> <span class="keywordflow">if</span>(val<=thresholdMax && val >=thresholdMin)</div>
<div class="line"><a id="l00560" name="l00560"></a><span class="lineno"> 560</span> {</div>
<div class="line"><a id="l00561" name="l00561"></a><span class="lineno"> 561</span> <span class="keywordflow">if</span>(!displayDigitalSurface)</div>
<div class="line"><a id="l00562" name="l00562"></a><span class="lineno"> 562</span> {</div>
<div class="line"><a id="l00563" name="l00563"></a><span class="lineno"> 563</span> viewer << WithQuantity(*it, <span class="stringliteral">"value"</span>, val);</div>
<div class="line"><a id="l00564" name="l00564"></a><span class="lineno"> 564</span> }</div>
<div class="line"><a id="l00565" name="l00565"></a><span class="lineno"> 565</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00566" name="l00566"></a><span class="lineno"> 566</span> {</div>
<div class="line"><a id="l00567" name="l00567"></a><span class="lineno"> 567</span> set3d.insert(*it);</div>
<div class="line"><a id="l00568" name="l00568"></a><span class="lineno"> 568</span> }</div>
<div class="line"><a id="l00569" name="l00569"></a><span class="lineno"> 569</span> }</div>
<div class="line"><a id="l00570" name="l00570"></a><span class="lineno"> 570</span> }</div>
<div class="line"><a id="l00571" name="l00571"></a><span class="lineno"> 571</span> viewer.endCurrentGroup();</div>
<div class="line"><a id="l00572" name="l00572"></a><span class="lineno"> 572</span> }</div>
<div class="line"><a id="l00573" name="l00573"></a><span class="lineno"> 573</span> </div>
<div class="line"><a id="l00574" name="l00574"></a><span class="lineno"> 574</span> </div>
<div class="line"><a id="l00575" name="l00575"></a><span class="lineno"> 575</span> </div>
<div class="line"><a id="l00576" name="l00576"></a><span class="lineno"> 576</span> <span class="keyword">auto</span> myImageOrigin = (image.domain().lowerBound()+image.domain().upperBound())/2.0;</div>
<div class="line"><a id="l00577" name="l00577"></a><span class="lineno"> 577</span> </div>
<div class="line"><a id="l00578" name="l00578"></a><span class="lineno"> 578</span> sliceXNum=myImageOrigin[0];</div>
<div class="line"><a id="l00579" name="l00579"></a><span class="lineno"> 579</span> sliceYNum=myImageOrigin[1];</div>
<div class="line"><a id="l00580" name="l00580"></a><span class="lineno"> 580</span> sliceZNum=myImageOrigin[2];</div>
<div class="line"><a id="l00581" name="l00581"></a><span class="lineno"> 581</span> </div>
<div class="line"><a id="l00582" name="l00582"></a><span class="lineno"> 582</span> <span class="comment">// Adding X slice in the viewer.</span></div>
<div class="line"><a id="l00583" name="l00583"></a><span class="lineno"> 583</span> DGtal::Z2i::Domain domain2DX(invFunctorX(image.domain().lowerBound()),</div>
<div class="line"><a id="l00584" name="l00584"></a><span class="lineno"> 584</span> invFunctorX(image.domain().upperBound()));</div>
<div class="line"><a id="l00585" name="l00585"></a><span class="lineno"> 585</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> aSliceFunctorX(0, image.domain(), sliceXNum, 2, 0 );</div>
<div class="line"><a id="l00586" name="l00586"></a><span class="lineno"> 586</span> <span class="keyword">const</span> DGtal::functors::Identity identityFunctor{};</div>
<div class="line"><a id="l00587" name="l00587"></a><span class="lineno"> 587</span> MyRotatorSliceImageAdapter sliceImageX( image, domain2DX, aSliceFunctorX, identityFunctor );</div>
<div class="line"><a id="l00588" name="l00588"></a><span class="lineno"> 588</span> slicePlaneX = initSlices(sliceImageX, <span class="stringliteral">"slicex"</span>, TypeSlice::SliceX, aSliceFunctorX);</div>
<div class="line"><a id="l00589" name="l00589"></a><span class="lineno"> 589</span> </div>
<div class="line"><a id="l00590" name="l00590"></a><span class="lineno"> 590</span> <span class="comment">// Adding Y slice in the viewer.</span></div>
<div class="line"><a id="l00591" name="l00591"></a><span class="lineno"> 591</span> DGtal::Z2i::Domain domain2DY(invFunctorY(image.domain().lowerBound()),</div>
<div class="line"><a id="l00592" name="l00592"></a><span class="lineno"> 592</span> invFunctorY(image.domain().upperBound()));</div>
<div class="line"><a id="l00593" name="l00593"></a><span class="lineno"> 593</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> aSliceFunctorY(1, image.domain(), sliceYNum, 0, 0 );</div>
<div class="line"><a id="l00594" name="l00594"></a><span class="lineno"> 594</span> MyRotatorSliceImageAdapter sliceImageY( image, domain2DY, aSliceFunctorY, identityFunctor );</div>
<div class="line"><a id="l00595" name="l00595"></a><span class="lineno"> 595</span> slicePlaneY = initSlices(sliceImageY, <span class="stringliteral">"slicey"</span>, TypeSlice::SliceY, aSliceFunctorY);</div>
<div class="line"><a id="l00596" name="l00596"></a><span class="lineno"> 596</span> </div>
<div class="line"><a id="l00597" name="l00597"></a><span class="lineno"> 597</span> <span class="comment">// Adding Z slice in the viewer.</span></div>
<div class="line"><a id="l00598" name="l00598"></a><span class="lineno"> 598</span> DGtal::Z2i::Domain domain2DZ(invFunctorZ(image.domain().lowerBound()),</div>
<div class="line"><a id="l00599" name="l00599"></a><span class="lineno"> 599</span> invFunctorZ(image.domain().upperBound()));</div>
<div class="line"><a id="l00600" name="l00600"></a><span class="lineno"> 600</span> DGtal::functors::SliceRotator2D<DGtal::Z3i::Domain> aSliceFunctorZ(2, image.domain(), sliceZNum, 1, 0 );</div>
<div class="line"><a id="l00601" name="l00601"></a><span class="lineno"> 601</span> MyRotatorSliceImageAdapter sliceImageZ( image, domain2DZ, aSliceFunctorZ, identityFunctor );</div>
<div class="line"><a id="l00602" name="l00602"></a><span class="lineno"> 602</span> slicePlaneZ = initSlices(sliceImageZ, <span class="stringliteral">"slicez"</span>, TypeSlice::SliceZ, aSliceFunctorZ);</div>
<div class="line"><a id="l00603" name="l00603"></a><span class="lineno"> 603</span> </div>
<div class="line"><a id="l00604" name="l00604"></a><span class="lineno"> 604</span> <span class="keywordflow">if</span>(inputFileNameSDP != <span class="stringliteral">""</span> )</div>
<div class="line"><a id="l00605" name="l00605"></a><span class="lineno"> 605</span> {</div>
<div class="line"><a id="l00606" name="l00606"></a><span class="lineno"> 606</span> <span class="keywordflow">if</span>(colorSDP.size()==4)</div>
<div class="line"><a id="l00607" name="l00607"></a><span class="lineno"> 607</span> {</div>
<div class="line"><a id="l00608" name="l00608"></a><span class="lineno"> 608</span> Color c(colorSDP[0], colorSDP[1], colorSDP[2], colorSDP[3]);</div>
<div class="line"><a id="l00609" name="l00609"></a><span class="lineno"> 609</span> viewer << c;</div>
<div class="line"><a id="l00610" name="l00610"></a><span class="lineno"> 610</span> }</div>
<div class="line"><a id="l00611" name="l00611"></a><span class="lineno"> 611</span> </div>
<div class="line"><a id="l00612" name="l00612"></a><span class="lineno"> 612</span> vector<Z3i::Point> vectVoxels;</div>
<div class="line"><a id="l00613" name="l00613"></a><span class="lineno"> 613</span> <span class="keywordflow">if</span>(vectSDPIndex.size()==3)</div>
<div class="line"><a id="l00614" name="l00614"></a><span class="lineno"> 614</span> {</div>
<div class="line"><a id="l00615" name="l00615"></a><span class="lineno"> 615</span> vectVoxels = PointListReader<Z3i::Point>::getPointsFromFile(inputFileNameSDP, vectSDPIndex);</div>
<div class="line"><a id="l00616" name="l00616"></a><span class="lineno"> 616</span> }<span class="keywordflow">else</span></div>
<div class="line"><a id="l00617" name="l00617"></a><span class="lineno"> 617</span> {</div>
<div class="line"><a id="l00618" name="l00618"></a><span class="lineno"> 618</span> vectVoxels = PointListReader<Z3i::Point>::getPointsFromFile(inputFileNameSDP);</div>
<div class="line"><a id="l00619" name="l00619"></a><span class="lineno"> 619</span> }</div>
<div class="line"><a id="l00620" name="l00620"></a><span class="lineno"> 620</span> </div>
<div class="line"><a id="l00621" name="l00621"></a><span class="lineno"> 621</span> <span class="keywordflow">if</span> (ballRadius != 0.0) viewer.drawAsBalls();</div>
<div class="line"><a id="l00622" name="l00622"></a><span class="lineno"> 622</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0;i< vectVoxels.size(); i++)</div>
<div class="line"><a id="l00623" name="l00623"></a><span class="lineno"> 623</span> {</div>
<div class="line"><a id="l00624" name="l00624"></a><span class="lineno"> 624</span> <span class="keywordflow">if</span>(!displayDigitalSurface)</div>
<div class="line"><a id="l00625" name="l00625"></a><span class="lineno"> 625</span> {</div>
<div class="line"><a id="l00626" name="l00626"></a><span class="lineno"> 626</span> viewer << vectVoxels.at(i);</div>
<div class="line"><a id="l00627" name="l00627"></a><span class="lineno"> 627</span> }</div>
<div class="line"><a id="l00628" name="l00628"></a><span class="lineno"> 628</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00629" name="l00629"></a><span class="lineno"> 629</span> {</div>
<div class="line"><a id="l00630" name="l00630"></a><span class="lineno"> 630</span> set3d.insert(vectVoxels.at(i));</div>
<div class="line"><a id="l00631" name="l00631"></a><span class="lineno"> 631</span> }</div>
<div class="line"><a id="l00632" name="l00632"></a><span class="lineno"> 632</span> }</div>
<div class="line"><a id="l00633" name="l00633"></a><span class="lineno"> 633</span> viewer.drawAsPaving();</div>
<div class="line"><a id="l00634" name="l00634"></a><span class="lineno"> 634</span> }</div>
<div class="line"><a id="l00635" name="l00635"></a><span class="lineno"> 635</span> </div>
<div class="line"><a id="l00636" name="l00636"></a><span class="lineno"> 636</span> <span class="keywordflow">if</span>(inputFileNameMesh != <span class="stringliteral">""</span>)</div>
<div class="line"><a id="l00637" name="l00637"></a><span class="lineno"> 637</span> {</div>
<div class="line"><a id="l00638" name="l00638"></a><span class="lineno"> 638</span> <span class="keywordflow">if</span>(colorMesh.size() != 0)</div>
<div class="line"><a id="l00639" name="l00639"></a><span class="lineno"> 639</span> {</div>
<div class="line"><a id="l00640" name="l00640"></a><span class="lineno"> 640</span> Color c(colorMesh[0], colorMesh[1], colorMesh[2], colorMesh[3]);</div>
<div class="line"><a id="l00641" name="l00641"></a><span class="lineno"> 641</span> viewer.drawColor(c);</div>
<div class="line"><a id="l00642" name="l00642"></a><span class="lineno"> 642</span> }</div>
<div class="line"><a id="l00643" name="l00643"></a><span class="lineno"> 643</span> DGtal::Mesh<Z3i::RealPoint> aMesh(colorMesh.size() == 0);</div>
<div class="line"><a id="l00644" name="l00644"></a><span class="lineno"> 644</span> MeshReader<Z3i::RealPoint>::importOFFFile(inputFileNameMesh, aMesh);</div>
<div class="line"><a id="l00645" name="l00645"></a><span class="lineno"> 645</span> viewer << aMesh;</div>
<div class="line"><a id="l00646" name="l00646"></a><span class="lineno"> 646</span> }</div>
<div class="line"><a id="l00647" name="l00647"></a><span class="lineno"> 647</span> </div>
<div class="line"><a id="l00648" name="l00648"></a><span class="lineno"> 648</span> <span class="keywordflow">if</span>(displayDigitalSurface)</div>
<div class="line"><a id="l00649" name="l00649"></a><span class="lineno"> 649</span> {</div>
<div class="line"><a id="l00650" name="l00650"></a><span class="lineno"> 650</span> KSpace K;</div>
<div class="line"><a id="l00651" name="l00651"></a><span class="lineno"> 651</span> Point low = domain.lowerBound(); low[0]=low[0]-1; low[1]=low[1]-1; low[2]=low[2]-1;</div>
<div class="line"><a id="l00652" name="l00652"></a><span class="lineno"> 652</span> Point upp = domain.upperBound(); upp[0]=upp[0]+1; upp[1]=upp[1]+1; upp[2]=upp[2]+1;</div>
<div class="line"><a id="l00653" name="l00653"></a><span class="lineno"> 653</span> K.init(low, upp , <span class="keyword">true</span>);</div>
<div class="line"><a id="l00654" name="l00654"></a><span class="lineno"> 654</span> SurfelAdjacency<3> SAdj( <span class="keyword">true</span> );</div>
<div class="line"><a id="l00655" name="l00655"></a><span class="lineno"> 655</span> vector<vector<SCell> > vectConnectedSCell;</div>
<div class="line"><a id="l00656" name="l00656"></a><span class="lineno"> 656</span> trace.info() << <span class="stringliteral">"Extracting surface set ... "</span> ;</div>
<div class="line"><a id="l00657" name="l00657"></a><span class="lineno"> 657</span> Surfaces<KSpace>::extractAllConnectedSCell(vectConnectedSCell,K, SAdj, set3d, <span class="keyword">true</span>);</div>
<div class="line"><a id="l00658" name="l00658"></a><span class="lineno"> 658</span> trace.info()<< <span class="stringliteral">" [done] "</span> <<std::endl;</div>
<div class="line"><a id="l00659" name="l00659"></a><span class="lineno"> 659</span> </div>
<div class="line"><a id="l00660" name="l00660"></a><span class="lineno"> 660</span> viewer.drawAsSimplified();</div>
<div class="line"><a id="l00661" name="l00661"></a><span class="lineno"> 661</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i= 0; i <vectConnectedSCell.size(); i++)</div>
<div class="line"><a id="l00662" name="l00662"></a><span class="lineno"> 662</span> {</div>
<div class="line"><a id="l00663" name="l00663"></a><span class="lineno"> 663</span> <span class="keywordflow">for</span>(<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> j= 0; j <vectConnectedSCell.at(i).size(); j++)</div>
<div class="line"><a id="l00664" name="l00664"></a><span class="lineno"> 664</span> {</div>
<div class="line"><a id="l00665" name="l00665"></a><span class="lineno"> 665</span> <span class="keyword">const</span> <span class="keyword">auto</span>& toDraw = vectConnectedSCell.at(i).at(j);</div>
<div class="line"><a id="l00666" name="l00666"></a><span class="lineno"> 666</span> <span class="keywordflow">if</span>(colorizeCC)</div>
<div class="line"><a id="l00667" name="l00667"></a><span class="lineno"> 667</span> {</div>
<div class="line"><a id="l00668" name="l00668"></a><span class="lineno"> 668</span> viewer << WithQuantity(toDraw, <span class="stringliteral">"index"</span>, i);</div>
<div class="line"><a id="l00669" name="l00669"></a><span class="lineno"> 669</span> }</div>
<div class="line"><a id="l00670" name="l00670"></a><span class="lineno"> 670</span> <span class="keywordflow">else</span> <span class="keywordflow">if</span>(colorSDP.size() != 0)</div>
<div class="line"><a id="l00671" name="l00671"></a><span class="lineno"> 671</span> {</div>
<div class="line"><a id="l00672" name="l00672"></a><span class="lineno"> 672</span> Color c(colorSDP[0], colorSDP[1], colorSDP[2], colorSDP[3]);</div>
<div class="line"><a id="l00673" name="l00673"></a><span class="lineno"> 673</span> viewer << WithQuantity(toDraw, <span class="stringliteral">"color"</span>, c);</div>
<div class="line"><a id="l00674" name="l00674"></a><span class="lineno"> 674</span> }</div>
<div class="line"><a id="l00675" name="l00675"></a><span class="lineno"> 675</span> <span class="keywordflow">else</span></div>
<div class="line"><a id="l00676" name="l00676"></a><span class="lineno"> 676</span> {</div>
<div class="line"><a id="l00677" name="l00677"></a><span class="lineno"> 677</span> viewer << toDraw;</div>
<div class="line"><a id="l00678" name="l00678"></a><span class="lineno"> 678</span> }</div>
<div class="line"><a id="l00679" name="l00679"></a><span class="lineno"> 679</span> }</div>
<div class="line"><a id="l00680" name="l00680"></a><span class="lineno"> 680</span> }</div>
<div class="line"><a id="l00681" name="l00681"></a><span class="lineno"> 681</span> }</div>
<div class="line"><a id="l00682" name="l00682"></a><span class="lineno"> 682</span> </div>
<div class="line"><a id="l00683" name="l00683"></a><span class="lineno"> 683</span> DGtal::Z3i::Point size = image.domain().upperBound() - image.domain().lowerBound();</div>
<div class="line"><a id="l00684" name="l00684"></a><span class="lineno"> 684</span> DGtal::Z3i::Point center = image.domain().lowerBound()+size/2;</div>
<div class="line"><a id="l00685" name="l00685"></a><span class="lineno"> 685</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> maxDist = std::max(std::max(size[2], size[1]), size[0]);</div>
<div class="line"><a id="l00686" name="l00686"></a><span class="lineno"> 686</span> polyscope::state::userCallback = callbackFaceID;</div>
<div class="line"><a id="l00687" name="l00687"></a><span class="lineno"> 687</span> </div>
<div class="line"><a id="l00688" name="l00688"></a><span class="lineno"> 688</span> viewer.show();</div>
<div class="line"><a id="l00689" name="l00689"></a><span class="lineno"> 689</span> <span class="keywordflow">return</span> 0;</div>
<div class="line"><a id="l00690" name="l00690"></a><span class="lineno"> 690</span>}</div>
<div class="ttc" id="anamespaceDGtal_html"><div class="ttname"><a href="namespaceDGtal.html">DGtal</a></div><div class="ttdef"><b>Definition</b> <a href="ATu0v1_8h_source.html#l00056">ATu0v1.h:57</a></div></div>
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