Filterbam parameter config setting

[Fishball99]

We can see the context in the /wf/analysis/taxonomy/config/config.yaml

tp_filter_entropy: "auto" tp_filter_gini: "auto"

And the filterbam shell script in rules/taxonomic-profiling-filtering.smk

{params.filter_bam_bin} -r {params.tp_sizes} \ -N \ -g {params.tp_filter_entropy} \ -e {params.tp_filter_gini} \ -m {params.tp_filter_sort_mem} \ -t {threads} \ -n {params.tp_filter_nreads} \ -b {params.tp_filter_exp_bratio} \ -c {params.tp_filter_cov_evenness} \ -A {params.tp_filter_read_ani} \ {params.tp_extra} {params.bowtie2_bam_dedup}

But as I know, the filterbam v1 has not the "auto" value for the parameter -e and -g, it needs the true number.
So, if you have an extra calculating step for the "auto" param here?

[genomewalker]

Version 1.1.27 (the one used in the wf env) accepts auto and a float 0-1

[Fishball99]

Thank you for your response!

Could I ask you another question?

I want to know what taxonomy files (names.dmp, nodes.dmo and acc2tax.map) used for gtdb database?
I've tried the files from https://github.com/shenwei356/gtdb-taxdump gtdb-taxdump, but I got empty .stat.gz file (only left the title) after running metaDMG lca (with .lca.gz file having contents)

mdmg_acc2tax: "/path/to/db/taxonomy/acc2taxid.map.gz" mdmg_nodes: "/path/to/db/taxonomy/nodes.dmp" mdmg_names: "/path/to/db/taxonomy/names.dmp"