CGP-Somatic-Docker/test2.yaml at develop · ICGC-TCGA-PanCancer/CGP-Somatic-Docker · GitHub

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---
tumor:
  path: "/media/large_volume/CGP-Somatic-Docker-input/ad4aeedc224c6be5e21e26c038a43df4.bam"
  class: File
normal:
  path: "/media/large_volume/CGP-Somatic-Docker-input/9f8f6f03df6d100c90a761164800a42c.bam"
  class: File
refFrom:
  path: https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-sanger/GRCh37d5_CGP_refBundle.tar.gz
  class: File
bbFrom:
  path: https://dcc.icgc.org/api/v1/download?fn=/PCAWG/reference_data/pcawg-sanger/GRCh37d5_battenberg.tar.gz
  class: File
somatic_snv_mnv_tar_gz:
  path: "/mnt/output/somatic_snv_mnv_tar_gz"
  class: File
somatic_cnv_tar_gz:
  path: "/mnt/output/somatic_cnv_tar_gz"
  class: File
somatic_sv_tar_gz:
  path: "/mnt/output/somatic_sv_tar_gz"
  class: File
somatic_indel_tar_gz:
  path: "/mnt/output/somatic_indel_tar_gz"
  class: File
somatic_imputeCounts_tar_gz:
  path: "/mnt/output/somatic_imputeCounts_tar_gz"
  class: File
somatic_genotype_tar_gz:
  path: "/mnt/output/somatic_genotype_tar_gz"
  class: File
somatic_verifyBamId_tar_gz:
  path: "/mnt/output/somatic_verifyBamId_tar_gz"
  class: File