Updated configuration yaml and README.md files for noaa-aws platform, release/2.1

Author: Natalie Perlin

configs/sites/tier1/noaa-aws/README.md

@@ -1,43 +1,47 @@
 # Provisiong ParallelWorks AWS clusters
 
-## Steps to perform before installing spack-stack version 1.9.3
-
-sudo su -
-chmod 777 /contrib
-yum install -y qt5-qtbase-devel
-yum install -y qt5-qtsvg-devel
+## Use ParallelWorks NOAA-AWS Rocky9 cluster
+## Steps to install ue-oneapi-2025.3.0 environment
 
+module purge
 
-## Steps to install spack-stack version 1.8.0
+mkdir -p /contrib/spack-stack-rocky9
+cd /contrib/spack-stack-rocky9/
+git clone --recurse-submodules -b release/2.1 https://github.com/jcsda/spack-stack.git spack-stack-2.1
+cd spack-stack-2.1
+source setup.sh
 
-sudo su -
-chmod 777 /contrib
+. setup.sh
+spack stack create env --site noaa-aws --template unified-dev --compiler oneapi-2025.3.0 --name ue-oneapi-2025.3.0
+spack env activate -p envs/ue-oneapi-2025.3.0
+cd ./envs/ue-oneapi-2025.3.0
 
-module purge
+export MODULES_AUTO_HANDLING=1
+module use /pw/apps/modules/intel/2025.3.0
+module load compiler/2025.3.0
+module load mpi
 
-cd /contrib/spack-stack-rocky8/
-git clone --recursive https://github.com/JCSDA/spack-stack -b release/1.9.0 spack-stack-1.9.3
-cd spack-stack-1.9.3
-. setup.sh
-spack stack create env --name ue-oneapi-2024.2.1 --template unified-dev --site noaa-aws --compiler oneapi
-cd envs/ue-oneapi-2024.2.1
-spack env activate .
 spack concretize 2>&1 | tee log.concretize
 spack install --verbose --fail-fast --show-log-on-error --no-check-signature 2>&1 | tee log.install
 spack module lmod refresh -y
 spack stack setup-meta-modules
 
-## Steps to install GSI addon
+## Steps to install gcc-12.4.0 environment
+
+module purge
+mkdir -p /contrib/spack-stack-rocky9
+cd /contrib/spack-stack-rocky9/
+cd spack-stack-2.1
+source setup.sh
 
-sudo su -
-chmod 777 /contrib
+spack stack create env --site noaa-aws --template unified-dev --compiler gcc-12.4.0 --name ue-gcc-12.4.0
+
+spack env activate -p envs/ue-gcc-12.4.0
+cd ./envs/ue-gcc-12.4.0
 
-cd /contrib/spack-stack-rocky8/spack-stack-1.9.3
-. setup.sh
-spack stack create env --name gsi-oneapi-2024.2.1 --template gsi-addon-dev --site noaa-aws --upstream /contrib/spack-stack-rocky8/spack-stack-1.9.3/envs/ue-oneapi-2024.2.1/install --compiler oneapi
-cd envs/gsi-oneapi-2024.2.1
-spack env activate .
 spack concretize 2>&1 | tee log.concretize
+
 spack install --verbose --fail-fast --show-log-on-error --no-check-signature 2>&1 | tee log.install
-spack module lmod refresh --upstream-modules
+
+spack module lmod refresh -y
 spack stack setup-meta-modules

configs/sites/tier1/noaa-aws/compilers.yaml

@@ -2,6 +2,11 @@ packages:
   all:
     providers:
       zlib-api:: [zlib]
+  zlib:
+    require::
+    - '@1.2.13'
+
+# All other packages listed alphabetically
   autoconf:
     externals:
     - spec: autoconf@2.69
@@ -12,112 +17,135 @@ packages:
       prefix: /usr
   bash:
     externals:
-    - spec: bash@4.4.20
+    - spec: bash@5.1.8
       prefix: /usr
-  berkeley-db:
+  binutils:
     externals:
-    - spec: berkeley-db@5.3.28
+    - spec: binutils@2.35.2~gold+headers
+      prefix: /usr
+  libd:
+    externals:
+    - spec: libdb@5.3.28
       prefix: /usr
   cpio:
     externals:
-    - spec: cpio@2.12
+    - spec: cpio@2.13
+      prefix: /usr
+  coreutils:
+    externals:
+    - spec: coreutils@8.32
+      prefix: /usr
+  cvs:
+    externals:
+    - spec: cvs@1.11.23
       prefix: /usr
   diffutils:
     externals:
-    - spec: diffutils@3.6
+    - spec: diffutils@3.7
+      prefix: /usr
+  doxygen:
+    externals:
+    - spec: doxygen@1.9.1+graphviz~mscgen
       prefix: /usr
   file:
     externals:
-    - spec: file@5.33
+    - spec: file@5.39
       prefix: /usr
   findutils:
     externals:
-    - spec: findutils@4.6.0
+    - spec: findutils@4.8.0
       prefix: /usr
   flex:
     externals:
-    - spec: flex@2.6.1
+    - spec: flex@2.6.4+lex
       prefix: /usr
   gawk:
     externals:
-    - spec: gawk@4.2.1
+    - spec: gawk@5.1.0
       prefix: /usr
   git:
     externals:
-    - spec: git@2.39.3~tcltk
+    - spec: git@2.47.3+tcltk
       prefix: /usr
   git-lfs:
     externals:
-    - spec: git-lfs@3.2.0
+    - spec: git-lfs@3.6.1
       prefix: /usr
   gmake:
     externals:
-    - spec: gmake@4.2.1
+    - spec: gmake@4.3
       prefix: /usr
   grep:
     externals:
-    - spec: grep@3.1
+    - spec: grep@3.6.5
       prefix: /usr
   groff:
     externals:
-    - spec: groff@1.22.3
+    - spec: groff@1.22.4
       prefix: /usr
   hwloc:
     externals:
-    - spec: hwloc@2.2.0
+    - spec: hwloc@2.4.1
       prefix: /usr
-  krb5:
+  krb5-lib:
     externals:
-    - spec: krb5@1.18.2
+    - spec: krb5@1.21.1
+      prefix: /usr
+  libtool:
+    externals:
+    - spec: libtool@2.4.6
+      prefix: /usr
+  m4:
+    externals:
+    - spec: m4@1.4.19
       prefix: /usr
   mysql:
     externals:
-    - spec: mysql@8.0.31
-      prefix: /contrib/spack-stack-rocky8/mysql-8.0.31
+    - spec: mysql@10.6.6
+      prefix: /usr
   ncurses:
     externals:
-    - spec: ncurses@6.1-10.20180224+termlib abi=5
+    - spec: ncurses@6.2 +termlib abi=6
       prefix: /usr
-  openjdk:
+  openssh:
     externals:
-    - spec: openjdk@1.8.0_402-b06
+    - spec: openssh@8.7p1
       prefix: /usr
   perl:
     externals:
     - spec: perl@5.26.3~cpanm+shared+threads
       prefix: /usr
   pkg-config:
     externals:
-    - spec: pkg-config@1.4.2
+    - spec: pkg-config@1.7.3
       prefix: /usr
-  qt:
-    buildable: false
-    externals:
-    - spec: qt@5.15.3
-      prefix: /usr/lib64/qt5
   rsync:
     externals:
-    - spec: rsync@3.1.3
+    - spec: rsync@3.2.5
       prefix: /usr
   ruby:
     externals:
-    - spec: ruby@2.5.9p229
+    - spec: ruby@3.0.7
       prefix: /usr
   sed:
     externals:
-    - spec: sed@4.5
+    - spec: sed@4.8
+      prefix: /usr
+  subversion:
+    externals:
+    - spec: subversion@1.14.1
       prefix: /usr
   tar:
     externals:
-    - spec: tar@1.30
+    - spec: tar@1.34
       prefix: /usr
   texinfo:
     externals:
-    - spec: texinfo@6.5-7
+    - spec: texinfo@6.7
       prefix: /usr
   wget:
     externals:
-    - spec: wget@1.19.5
+    - spec: wget@1.21.1
       prefix: /usr
   zip:
     externals:

configs/sites/tier1/noaa-aws/packages.yaml

@@ -0,0 +1,26 @@
+packages:
+  mpi:
+    buildable: False
+    require:
+    - openmpi@4.1.6
+  gcc:
+    buildable: False
+    externals:
+      - spec: gcc@12.4.0 languages:='c,c++,fortran'
+        prefix: /apps/spack-2024-12/linux-rocky9-x86_64/gcc-11.4.1/gcc-12.4.0-dsgnou52lpn2tus6mohdmcw5mjqmqrhj
+        modules:
+        - gcc/12.4.0
+        extra_attributes:
+          compilers:
+            c: /apps/spack-2024-12/linux-rocky9-x86_64/gcc-11.4.1/gcc-12.4.0-dsgnou52lpn2tus6mohdmcw5mjqmqrhj/bin/gcc
+            cxx: /apps/spack-2024-12/linux-rocky9-x86_64/gcc-11.4.1/gcc-12.4.0-dsgnou52lpn2tus6mohdmcw5mjqmqrhj/bin/g++
+            fortran: /apps/spack-2024-12/linux-rocky9-x86_64/gcc-11.4.1/gcc-12.4.0-dsgnou52lpn2tus6mohdmcw5mjqmqrhj/bin/gfortran
+  openmpi:
+    buildable: false
+    externals:
+    - spec: openmpi@4.1.6~internal-hwloc+two_level_namespace
+      prefix: /apps/spack-2024-12/linux-rocky9-x86_64/gcc-11.4.1/openmpi-4.1.6-2dkf6t23iyw4xodxruh72yvmrhhvyoms
+      modules:
+      - gnu/12.4.0
+      - openmpi/4.1.6
+