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Merged
gaelforget merged 9 commits into from
Sep 27, 2025
Merged

Update page 202509 #115

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5296e28
update notebook links
gaelforget Sep 26, 2025
ac6c059
update julia download, using juliaup
gaelforget Sep 26, 2025
d0e89ee
add curl for juliaup install
gaelforget Sep 26, 2025
b7e553a
update / fix Dockerfile
gaelforget Sep 26, 2025
525ec7a
update / fix Dockerfile
gaelforget Sep 26, 2025
ed6363c
update to Climatology.jl
gaelforget Sep 26, 2025
fb4f1f9
fix for juliaup
gaelforget Sep 26, 2025
6ed97cb
fixes (?)
gaelforget Sep 26, 2025
a98a8e8
fix Dockerfile, update to Drifters
gaelforget Sep 27, 2025
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8 changes: 4 additions & 4 deletions .github/workflows/DeployPage.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ on:
push:
branches:
- master
- v0p3p17d
- update_page_202509
pull_request:
jobs:
build-and-deploy:
Expand All @@ -20,9 +20,9 @@ jobs:
# python-version: '3.8'
# - run: pip install matplotlib
- name: Install Julia
uses: julia-actions/setup-julia@v1
uses: julia-actions/setup-julia@v2
with:
version: 1.9
version: 1
# NOTE
# Adjust the `input=""` on the last line to indicate where
# the source of the package page is (`page/` by default).
Expand All @@ -49,7 +49,7 @@ jobs:
Pkg.add.(["Pluto", "PlutoUI", "PlutoSliderServer"]);
Pkg.add.(["YAXArrays", "Zarr", "NetCDF", "EarthDataLab"]);
Pkg.add.(["ArchGDAL","Colors","DiskArrays","Dataverse"]);
Pkg.add.(["OceanStateEstimation","IJulia"]);
Pkg.add.(["Climatology","IJulia"]);
include("src/warmup1.jl");
include("tutorials/run_notebooks.jl");'
- name: Build and Deploy
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42 changes: 16 additions & 26 deletions Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,37 +1,14 @@
FROM jupyter/base-notebook:latest

USER root
RUN wget https://julialang-s3.julialang.org/bin/linux/x64/1.10/julia-1.10.2-linux-x86_64.tar.gz && \
tar -xvzf julia-1.10.2-linux-x86_64.tar.gz && \
mv julia-1.10.2 /opt/ && \
ln -s /opt/julia-1.10.2/bin/julia /usr/local/bin/julia && \
rm julia-1.10.2-linux-x86_64.tar.gz

ENV mainpath ./
RUN mkdir -p ${mainpath}

USER ${NB_USER}

COPY --chown=${NB_USER}:users ./src ${mainpath}/src
COPY --chown=${NB_USER}:users ./src/plutoserver ${mainpath}/plutoserver

RUN cp ${mainpath}/src/setup.py ${mainpath}/setup.py
RUN cp ${mainpath}/src/runpluto.sh ${mainpath}/runpluto.sh
RUN cp ${mainpath}/src/environment.yml ${mainpath}/environment.yml
RUN cp ${mainpath}/src/Project.toml ${mainpath}/Project.toml

ENV USER_HOME_DIR /home/${NB_USER}
ENV JULIA_PROJECT ${USER_HOME_DIR}
ENV JULIA_DEPOT_PATH ${USER_HOME_DIR}/.julia

RUN julia -e "import Pkg; Pkg.Registry.update();"
RUN julia -e "import Pkg; Pkg.instantiate();"

USER root

RUN apt-get update && \
apt-get install -y --no-install-recommends build-essential && \
apt-get install -y --no-install-recommends vim && \
apt-get install -y --no-install-recommends curl && \
apt-get install -y --no-install-recommends git-all && \
apt-get install -y --no-install-recommends unzip && \
apt-get install -y --no-install-recommends gfortran && \
Expand All @@ -43,13 +20,26 @@ RUN apt-get update && \

USER ${NB_USER}

RUN echo 'alias julia="${mainpath}/.juliaup/bin/julia --project=${mainpath}"' >> ~/.bashrc
RUN curl -fsSL https://install.julialang.org | sh -s -- --yes

COPY --chown=${NB_USER}:users ./src ${mainpath}/src
COPY --chown=${NB_USER}:users ./src/plutoserver ${mainpath}/plutoserver

RUN cp ${mainpath}/src/setup.py ${mainpath}/setup.py
RUN cp ${mainpath}/src/runpluto.sh ${mainpath}/runpluto.sh
RUN cp ${mainpath}/src/environment.yml ${mainpath}/environment.yml
RUN cp ${mainpath}/src/Project.toml ${mainpath}/Project.toml

RUN ${mainpath}/.juliaup/bin/julia --project=${mainpath}/src -e "import Pkg; Pkg.update(); Pkg.instantiate();"

RUN jupyter lab build && \
jupyter lab clean && \
pip install ${mainpath} --no-cache-dir && \
rm -rf ~/.cache

RUN julia ${mainpath}/src/warmup1.jl
RUN julia ${mainpath}/src/download_notebooks.jl
RUN ${mainpath}/.juliaup/bin/julia --project=${mainpath}/src ${mainpath}/src/warmup1.jl
RUN ${mainpath}/.juliaup/bin/julia --project=${mainpath}/src ${mainpath}/src/download_notebooks.jl

RUN mkdir .dev
RUN mv build plutoserver.egg-info .dev
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