KeyError: 'SIRV107' SIRV_concentration.py

[cedric-k-n]

 Hello!

First, thank you for creating SIRVsuite—it has been incredibly helpful for our SIRV spike-in control analysis, and we plan to continue using it extensively.

I have tested SIRVsuite on two datasets so far:

1. First Dataset:

Initially encountered an ERCC Key Error.
After checking the GitHub issues, I implemented the .get() suggestion in ERCC_correlation.py, which resolved the issue.

2 . Second Dataset:

Encountered an SIRV Key Error in SIRV_concentration.py.
I attempted modifications in SIRV_concentration.py, but the issue persists.

Here is the error message:

 -2025-02-12 11:46:44 INFO     helper: reading sample sheet
Traceback (most recent call last):
  File "/usr/local/bin/SIRVsuite", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.8/site-packages/SIRVsuite/SIRVsuite.py", line 69, in main
    module_concentration = SIRVsuiteConcentration(sample_sheet=input_dict["SIRV-concentration"], output_dir=out)
  File "/usr/local/lib/python3.8/site-packages/SIRVsuite/Pipeline/Concentration/SIRV_concentration.py", line 63, in __init__
    self.export_data(self.data)
  File "/usr/local/lib/python3.8/site-packages/SIRVsuite/Pipeline/Concentration/SIRV_concentration.py", line 187, in export_data
    out_file.write(transcript+"\t"+"\t".join([str(norm_abund_dict[group][transcript]) for group in groups])+"\n")
  File "/usr/local/lib/python3.8/site-packages/SIRVsuite/Pipeline/Concentration/SIRV_concentration.py", line 187, in <listcomp>
    out_file.write(transcript+"\t"+"\t".join([str(norm_abund_dict[group][transcript]) for group in groups])+"\n")
KeyError: 'SIRV107'

Do you have any suggestions for resolving this SIRV Key Error?

Thanks in advance for your help!

Cedric