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161 lines (161 loc) · 7.27 KB
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Copy pathmodules.json
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161 lines (161 loc) · 7.27 KB
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{
"name": "nf-core/plantlongrnaseq",
"homePage": "https://github.com/nf-core/plantlongrnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"centrifuge/centrifuge": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"centrifuge/kreport": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"custom/tx2gene": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["quantify_pseudo_alignment"]
},
"deseq2/differential": {
"branch": "master",
"git_sha": "25c228dd132d91596e87b636b0e03fd48d4c951a",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gawk": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"gffcompare": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"gffread": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"kallisto/quant": {
"branch": "master",
"git_sha": "8864afe586537bf562eac7b83349c26207f3cb4d",
"installed_by": ["quantify_pseudo_alignment"]
},
"kraken2/kraken2": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"liftoff": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "a532706a19b3d83f14b1d48a6a815ed33eb48b0c",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"pbtk/bam2fastq": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"picard/filtersamreads": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"]
},
"salmon/quant": {
"branch": "master",
"git_sha": "db5a84497b80c4932b4498ec231f19403d19bcff",
"installed_by": ["quantify_pseudo_alignment"]
},
"samtools/bam2fq": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_stats_samtools"]
},
"samtools/view": {
"branch": "master",
"git_sha": "d090922b1a4b80ba283186459ababf8e308abcbb",
"installed_by": ["modules"]
},
"summarizedexperiment/summarizedexperiment": {
"branch": "master",
"git_sha": "1f008221e451e7a4738226c49e69aaa2eb731369",
"installed_by": ["quantify_pseudo_alignment"]
},
"tximeta/tximport": {
"branch": "master",
"git_sha": "1f008221e451e7a4738226c49e69aaa2eb731369",
"installed_by": ["quantify_pseudo_alignment"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_stats_samtools": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}