moducomp/pyproject.toml at main · NeLLi-team/moducomp · GitHub

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[build-system]
requires = ["flit_core >=3.2,<4"]
build-backend = "flit_core.buildapi"

[project]
name = "moducomp"
authors = [{ name = "Juan C. Villada", email = "jvillada@lbl.gov" }]
readme = "README.md"
license = { file = "LICENSE.txt" }
keywords = ["bioinformatics", "microbiome", "metabolic", "kegg", "genomics"]
requires-python = ">=3.9,<3.12"
classifiers = [
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Operating System :: POSIX :: Linux",
]
dependencies = [
    "typer>=0.9.1,<0.10.0",
    "pandas>=1.5,<2.3",
    "click~=8.0.0",
    "eggnog-mapper>=2.1.9,<2.2.0",
    "kegg-pathways-completeness",
]
dynamic = ["version", "description"]

[project.scripts]
moducomp = "moducomp.moducomp:app"

[project.urls]
Homepage = "https://github.com/NeLLi-team/moducomp"
Documentation = "https://github.com/NeLLi-team/moducomp#readme"
Repository = "https://github.com/NeLLi-team/moducomp"
"Bug Tracker" = "https://github.com/NeLLi-team/moducomp/issues"

[tool.pixi.workspace]
channels = ["conda-forge", "bioconda"]
platforms = ["linux-64"]

[tool.pixi.pypi-dependencies]
moducomp = { path = ".", editable = true }

[tool.pixi.dependencies]
python = ">=3.9,<3.12"
pandas = ">=1.5,<2.3"
typer = ">=0.9.1,<0.10.0"
click = "~=8.0.0"
eggnog-mapper = ">=2.1.9,<2.2.0"
kegg-pathways-completeness = "*"

[tool.pixi.tasks]
moducomp = "python -m moducomp"
test = "python -m moducomp test --ncpus 2 --calculate-complementarity 2"
setup = "python -m moducomp setup"
pipeline = "python -m moducomp pipeline --help"
analyze_ko_matrix = "python -m moducomp analyze-ko-matrix --help"