How do I remove the pathway row from my oncoplot?

[Sjs3942]

Hi,

I am trying to create an oncoplot of genes that are mutated within a pathway I defined. The code is working great but does anyone know how to remove the bottom grey row of the oncoplot that shows the distribution of the pathway?

`#Define the pathway
GI_R_pathways = data.frame(
Genes = c(
"ATM",
"BRCA2",
"ATR",
"BRCA1",
"CHEK2",
"ERCC2",
"MSH6",
"POLQ",
"STAG2",
"PPM1D",
"SMC1A"
),
Pathway = rep(c(
"Genome_integrity"
), c(11)),
stringsAsFactors = FALSE
)

oncoplot(maf = maf.filef, pathways = GI_R_pathways)`

[PoisonAlien]

Hi,
You could just draw an oncoplot with genes argument

maftools::oncoplot(maf = maf.filef, genes = c("POLQ", "ATR", "BRCA1", "ERCC2"))

[Sjs3942]

Yes, and I have done that before, but I was hoping to find a method that was more automated than manually inputting the genes since I'm making a lot of oncoplots for different combinations of samples and pathways. @PoisonAlien