RTX/requirements.txt at master · RTXteam/RTX · GitHub

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# Python 3.12

pandas==2.3.1  # UPGRADED: pandas 1.5.3 doesn't support Python 3.12
numpy==1.26.4  # UPGRADED: numpy 1.24.2 doesn't support Python 3.12
requests==2.32.3
requests-cache==1.2.1
matplotlib
seaborn
psutil
neo4j-driver>=1.7.0,<=1.7.6
ipython-cypher==0.2.6
networkx==2.8.8
graphviz==0.20.1
lxml==4.9.4  # UPGRADED: 4.9.1 doesn't build on Python 3.12, 4.9.4 has pre-built wheels
nltk==3.7
scipy==1.15.3  # UPGRADED: scipy 1.10.1 doesn't support Python 3.12
scikit-learn==1.7.1 # compatible with Python 3.12
connexion==2.14.2
connexion[swagger-ui]
Flask==2.2.5
Flask-Cors==3.0.10
SQLAlchemy==1.4.47
pymysql==1.1.1
CacheControl==0.14.4
filelock==3.20.3
lockfile==0.12.2
# simple-crypt==4.1.7 REMOVED - incompatible with Python 3.12 (depends on old pycrypto)
pycryptodome==3.23.0  # ADDED: Modern replacement for pycrypto, compatible with Python 3.12
tomark==0.1.4
md-toc==8.1.4
pickledb==0.9.2
pytest==8.1.1
joblib==1.2.0
PyYAML==6.0.2  # UPGRADED: 6.0 doesn't have pre-built wheels for Python 3.12, 6.0.2 does
ujson==5.4.0
# asyncio==3.4.3 # built into Python 3.12
aiohttp==3.9.4
boto3==1.40.16  # UPGRADED: 1.24.59 doesn't support urllib3>=2.5.0 required by reasoner-validator 5.0.0
tornado==6.4.1
MarkupSafe==2.1.2
reasoner-validator==6.0.1
pronto==2.5.3
pygit2==1.18.0  # UPGRADED: 1.10.0 doesn't build on Python 3.12, 1.18.0 has pre-built wheels
tabulate==0.9.0
urllib3==2.5.0  # UPGRADED: 1.26.19 doesn't meet reasoner-validator 5.0.0 requirement of urllib3>=2.5.0
setproctitle==1.3.3
setuptools<82.0.0
opentelemetry-api==1.17.0
opentelemetry-exporter-jaeger==1.17.0
opentelemetry-exporter-jaeger-proto-grpc==1.17.0
opentelemetry-exporter-jaeger-thrift==1.17.0
opentelemetry-exporter-otlp-proto-http==1.17.0
opentelemetry-instrumentation==0.38b0
opentelemetry-instrumentation-aiohttp-client==0.38b0
opentelemetry-instrumentation-flask==0.38b0
opentelemetry-instrumentation-requests==0.38b0
opentelemetry-instrumentation-wsgi==0.38b0
opentelemetry-proto==1.17.0
opentelemetry-sdk==1.17.0
opentelemetry-semantic-conventions==0.38b0
opentelemetry-util-http==0.38b0
catrax-pathfinder==1.2.2
biolink-helper-pkg==1.0.1
httpx
openapi-generator-cli==7.19.0