#7
Summary stats file from paqman modifies the header depending on the --seq parameter
However paqplots for the moment explicitly requires the contig naming
When providing a 'list' (-l):
paqplot completes the run however that is because the contig header is used in creating the compiled summary stats file regardless of the headers of the inputs
When providing your own compiled summary stats file or a single output (-s):
paqplots cannot use a summary file with contigs
Need to have paqplots:
-for (-l) check whether the headers has scaffolds or contigs (and do not accept a combination)
-for (-a) use the header provided
-for both (-a ; -l) use explicitly the scaffold or contig naming scheme for the plots (R script to decide)
#7
Summary stats file from paqman modifies the header depending on the --seq parameter
However paqplots for the moment explicitly requires the contig naming
When providing a 'list' (-l):
paqplot completes the run however that is because the contig header is used in creating the compiled summary stats file regardless of the headers of the inputs
When providing your own compiled summary stats file or a single output (-s):
paqplots cannot use a summary file with contigs
Need to have paqplots:
-for (-l) check whether the headers has scaffolds or contigs (and do not accept a combination)
-for (-a) use the header provided
-for both (-a ; -l) use explicitly the scaffold or contig naming scheme for the plots (R script to decide)