This repository hosts several imaging-related software packages which have been compiled into Docker images for use in Trusted Reserach Environments (TREs).
| Software | Image | Notes |
|---|---|---|
| Freesurfer | ghcr.io/smi/freesurfer:latest |
Requires a user-provided license file |
| FSL | ghcr.io/smi/fsl:latest |
|
| MRIcron | ghcr.io/smi/mricron:latest |
|
| MRIcroGL | ghcr.io/smi/mricrogl:latest |
See EPCC's TRE Container User Guide for more information.
Containers for other applications can be found in EPCC's TRE Container Samples repository.
XSOCK=/tmp/.X11-unix
XAUTH=/tmp/.docker.xauth
xauth nlist "$DISPLAY" | sed -e 's/^..../ffff/' | xauth -f "$XAUTH" nmerge -
docker run --rm -it \
-e USER="$USER" \
-e DISPLAY="$DISPLAY" \
-e XAUTHORITY="$XAUTH" \
-v $XSOCK:$XSOCK \
-v $XAUTH:$XAUTH \
<image-name>