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  • Fix wiki accuracy issues found during code review Normalization page: - Update Data Availability: all NIfTI files are now in repo - Add Known Issues section documenting script bugs (uncommented variable refs, syntax error, filename typo) - Fix Step 1 code example to match actual script behavior - Add warning about TemplateNorm..R bugs Annotation page: - Add Known Issues section for newLabel.txt data problems (missing space in 844882, duplicate OT/ILM/MTN entries) - Fix PVT categorization (thalamus, not hypothalamus) - Add 13 missing regions to Isocortex table - Add 4 missing regions to Thalamus table (STM, PVT, LAT, EPI) - Add 2 missing grooves entries to Fiber Tracts table - Clarify doAllROIextract.m roipath parameter and type=2 behavior Co-Authored-By: Claude (claude-opus-4-6) <noreply@anthropic.com>

    @Taiyou Taiyou committed Feb 10, 2026
    508bbf1

  • Add data availability sections to Atlas wiki pages Document atlasVolume.nii Git LFS access and request-based availability for other NIfTI files not tracked in the repository. Co-Authored-By: Claude (claude-opus-4-6) <noreply@anthropic.com>

    @Taiyou Taiyou committed Feb 10, 2026
    be88c02

  • Add Allen Brain Atlas Annotation & ROI Extraction wiki page Document the atlas/ directory with 194 brain region definitions, MATLAB ROI extraction scripts, and annotation label format. Add link to Home page. Co-Authored-By: Claude (claude-opus-4-6) <noreply@anthropic.com>

    @Taiyou Taiyou committed Feb 10, 2026
    fed7a1b

  • Add Allen Brain Atlas Normalization wiki page Document the normalization pipeline in AllenBrainAtlas/normalization/, covering both Atlas-to-Template and Template-to-Atlas directions using ANTsR. Add link to Home page. Co-Authored-By: Claude (claude-opus-4-6) <noreply@anthropic.com>

    @Taiyou Taiyou committed Feb 10, 2026
    d0124b4

  • Fix MRI field strength: 9.4T -> 11.7T

    @Taiyou Taiyou committed Jan 24, 2026
    b1c1472

  • Add comprehensive wiki documentation - Home.md: Main page with quick links and key findings - Project-Overview.md: Background, experimental design, main findings - Data-Structure.md: Directory structure and file format documentation - Analysis-Pipeline.md: Complete workflow and function reference - ROIs.md: 28 brain regions with detailed descriptions - Figure-Generation.md: Step-by-step guide for reproducing all figures

    @Taiyou Taiyou committed Jan 24, 2026
    2c1872c

  • Updated Home (markdown)

    @Taiyou Taiyou committed Apr 16, 2024
    22b360a

  • Updated Home (markdown)

    @Taiyou Taiyou committed Apr 16, 2024
    f064a6a

  • Updated Home (markdown)

    @Taiyou Taiyou committed Apr 16, 2024
    83282f1

  • Initial Home page

    @Taiyou Taiyou committed Apr 16, 2024
    d91f44c