`scipen` in R version 4.5.0

[sklarz-bgu]

Hi

We ran into an issue that arises from line 134 in leiden.R file.

oo <- options(scipen = 100000000000)

It outputs an error about the value being out of range for scipen.

This might arise from the following bug fix in version 4.5.0 of R:

options(scipen = NULL) and other invalid values now signal an error instead of
invalidating ops relying on a finite integer value. Values outside the range -9 .. 9999
are now warned about and set to a boundary or to the default 0, e.g., in case of an
NA.

Thanks!
Menachem

[maximemeylan]

Hi,

Got the same issue using R 4.5.0 as well.

Error in options(scipen = 1e+11) : setting scipen=1e+11 is out of range

Thanks again for this great tool!
Maxime

[kokaidavid1]

Hi!

I was able to solve the problem. I went into the leiden directory, opened the R files, and manually modified the scipen argument to scipen = 999

Best
David

[wxpbioinfo]

This doesn't seem to work for me. Could you please suggest a more specific approach? Thank you.

Hi!

I was able to solve the problem. I went into the leiden directory, opened the R files, and manually modified the scipen argument to scipen = 999

Best David

This doesn't seem to work for me.
Could you please suggest a more specific approach?
Thank you.