--sample-case/--sample-cont requires a text file with two columns.
The first one is population and the second column is sample ID's.
These Samples must be a subset of samples used in the --input/--vcf-cont vcf file, respectively.
| #Population | Sample |
|---|---|
| FIN | HG00171 |
| FIN | HG00173 |
| ... | ... |
| YRI | NA19144 |
| YRI | NA19146 |
| ... | ... |
- TAB separated
- No Header
- Comment by #