Release v0.12.0-alpha.6

Author: althonos

CHANGELOG.md

@@ -8,17 +8,19 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 ## [Unreleased]
 [Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.11.4...HEAD
 
-## [v0.12.0-alpha.5] - 2026-01-15
-[v0.12.0-alpha.5]: https://github.com/althonos/pyhmmer/compare/v0.11.4...v0.12.0-alpha.5
+## [v0.12.0-alpha.6] - 2026-01-21
+[v0.12.0-alpha.6]: https://github.com/althonos/pyhmmer/compare/v0.11.4...v0.12.0-alpha.6
 
 ### Added
+- Support for Windows AMD64 builds with MinGW ([#92](https://github.com/althonos/pyhmmer/issues/92), see [documentation](https://pyhmmer.readthedocs.io/en/latest/guide/windows.html)).
 - `SequenceBlock.write` method to write all sequences from a block to a file.
 - `SequenceBlock.total_length` to compute the sum of lengths of sequences in a block.
 - Subclasses `DNA`, `RNA` and `AA` of `pyhmmer.easel.Alphabet` to allow marking the alphabet type with type annotations.
 - `VectorI` and `MatrixI` classes to `pyhmmer.easel` to store C `int` types (usually 32 bits).
 - `OptimizedProfile.ssv_filter` method for NEON target in addition to SSE.
 - `msv_filter` method to `Profile` and `OptimizedProfile` classes.
 - `Background.null1` to compute the null1 lod score for an arbitrary `Sequence`.
+- `HMMFile._file` exposing the internal file-like object given to `HMMFile` constructor, if any ([#89](https://github.com/althonos/pyhmmer/issues/89)).
 ### Changed
 - Setup compilation in Stable ABI mode for Python 3.12 and later.
 - Setup distribution to generate a CMake package file to facilitate usage with downstream `scikit-build-core` dependent packages.

pyproject.toml

@@ -1,10 +1,11 @@
+
 [build-system]
 requires = ["scikit-build-core >=0.11", "cython >=3.0"]
 build-backend = "scikit_build_core.build"
 
 [project]
 name = "pyhmmer"
-version = "0.12.0-alpha.5"
+version = "0.12.0-alpha.6"
 description = "Cython bindings and Python interface to HMMER3."
 readme = "README.md"
 requires-python = ">=3.7"
@@ -99,33 +100,12 @@ cmake.define.CMAKE_CXX_COMPILER_LAUNCHER = "sccache"
 if.env.MOLD = true
 cmake.define.CMAKE_LINKER_TYPE = "mold"
 
-[[tool.scikit-build.overrides]]
-if.env.CIBUILDWHEEL = true
-sdist.exclude = [
-    "build",
-    "benches",
-    "docs",
-    "vendor/easel/documentation",
-    "vendor/easel/demotic",
-    "vendor/easel/miniapps",
-    "vendor/hmmer/documentation",
-    "vendor/**/*.ai",
-    "vendor/**/*.pl",
-    # Remove extra test files to trim the wheels that go on PyPI
-    "src/pyhmmer/tests/data/hmms/txt2/RREFam.*",
-    "src/pyhmmer/tests/data/hmms/txt/RREFam.*",
-    "src/pyhmmer/tests/data/hmms/db/RREFam.*",
-    "src/pyhmmer/tests/data/hmms/*/bmyD.*",
-    "src/pyhmmer/tests/data/seqs/BGC0001090.gbk",
-    "src/pyhmmer/tests/data/seqs/1390.SAMEA104415756.*",
-]
-
 [tool.coverage.run]
 plugins = ["Cython.Coverage"]
 
 [tool.cibuildwheel]
 before-build = "pip install scikit-build-core cython ninja"
-build-frontend = { name = "build", args = ["-w", "--no-isolation"] }
+build-frontend = { name = "build" }
 build-verbosity = 1
 test-command = "python -m unittest pyhmmer.tests -v"
 test-extras = ["test"]