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NAMESPACE
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78 lines (77 loc) · 2.11 KB
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# Generated by roxygen2: do not edit by hand
export(calcPTMOccupancy)
export(def_param)
export(gather_all_sims)
export(generate_combinations)
export(get_simulation)
export(get_stage_hashes)
export(matrix_benchmarks)
export(plot_params)
export(run_sims)
export(set_proteomaker)
export(visualize_benchmarks)
export(visualize_one_sim)
importFrom(Hmisc,list.tree)
importFrom(MASS,rlm)
importFrom(PeptideRanger,peptide_predictions)
importFrom(colorspace,qualitative_hcl)
importFrom(crayon,red)
importFrom(digest,digest)
importFrom(dplyr,"%>%")
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_at)
importFrom(dplyr,vars)
importFrom(e1071,kurtosis)
importFrom(e1071,skewness)
importFrom(gplots,colorpanel)
importFrom(gplots,plotCI)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,rect)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(lattice,levelplot)
importFrom(matrixStats,rowSds)
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,setDefaultCluster)
importFrom(parallel,stopCluster)
importFrom(plotly,plot_ly)
importFrom(plotly,subplot)
importFrom(scales,rescale)
importFrom(stats,aggregate)
importFrom(stats,approx)
importFrom(stats,coef)
importFrom(stats,median)
importFrom(stats,medpolish)
importFrom(stats,na.omit)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,str_count)
importFrom(stringr,str_extract)
importFrom(stringr,str_locate_all)
importFrom(stringr,str_split)
importFrom(tidyr,pivot_longer)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(yaml,yaml.load_file)