| title | Syllabus |
|---|---|
| layout | page |
Please see last year's syllabus (with slide packs at the bottom) for previews for this year’s lectures, which will be slightly different. For this year, an updated slide pack will be posted after the lecture. (If it is substantially different from '22, an updated video will also be posted.) Video recordings for this year's lectures can be found in the Media Library tab in Canvas.
| Topic | 2025 Spring's Lecture | 2023 Spring's Lecture | Comment | Lecture Summary | |
|---|---|---|---|---|---|
| 1/13 | *YALE* Spring term classes begin, 8.20 a.m. | ||||
| 1/13 | Introduction | 25i1-25i2a | 23i1, 23i2a | ||
| 1/15 | DATA - Proteomics I | 25d3 | 23d3 | Suggested Reading | 25d3 |
| 1/22 | DATA - Proteomics II | 25d4 | 23d4 | Suggested Reading | 25d4 |
| 1/27 | DATA - Genomics I | 25d1 | 23d1 | 25d1 | |
| 1/29 | DATA - Genomics II | 25d2 | 23d2 | 25d2 | |
| 2/3 | DATA - Knowledge Representation & Databases | 25d5 | 23d5 | 25d5 | |
| 2/5 | MINING - Personal Genomes + Seq. Comparison | 25i2b,25m3 | 23i2b,23m3 | 25i2b, 25m3-part1 | |
| 2/10 | MINING - Seq. Comparison (con't) + Multi-seq Alignment + Fast Alignment | 25m3, 25m4, 25m5 | 23m3, 23m4, 23m5 | 25m3-part2,25m4,25m5 | |
| 2/12 | MINING - Variant Calling (incl. a focused section on SVs)+ Basic Multi-Omics | 25m6a，25m6b, 25m7-pt1 | 23m6a, 23m6b,23m7 | 25m6a,25m6b,25m7-part1 | |
| 2/17 | Quiz on 1st Half | quiz1 study guide, quiz1 key | |||
| 2/19 | MINING - Basic Multi-Omics(con't) + Supervised Mining #1 | 25m7-pt2, 25m8a, 25m8b | 23m7,23m8a,23m8b | 25m7-part2, 25m8a+b | |
| 2/24 | MINING - Supervised Mining #2 + Deep Learning Fundamentals #1 + Deep Learning Fundamentals #2 | 25m8c, 25t3, 25t4-pt1 | 23m8c | 25m8c, 25t3 | |
| 2/26 | MINING - Deep Learning Fundamentals #2 (con't)+ Unsupervised Mining #1 | 25t4-pt2, 25m9a, 25m9c | 23m9a, 23m9c | 25t4-pt2, 25m9a, 25m9c | |
| 3/3 | MINING - Single-Cell Analysis #1 + Single-Cell Analysis #2 + Network Analysis #1 | 25m9e, 25t1, 25m10a, 25m10b | 23m9e, 23m10a, 23m10b | 25m9e,25t1,25m10a, 25m10b | |
| 3/5 | MINING - Network Analysis #2 + Biomedical Image Analysis | 25m10e, 25t2, 25m10c | 23m10c, 23m10d, 23m10e | 25m10e, 25t2, 25m10c | |
| 3/7 | Spring break begins | ||||
| 3/24 | MINING - Privacy | 25m11a,25m11b | 23m11a, 23m11b | ||
| 3/26 | MINING/MODELING - Deep Learning Advanced I | 25m12a | 23m12a | 25m12a | |
| 3/31 | MINING/MODELING - Deep Learning Advanced II | 25m12b | 23m12b | 25m12b | |
| 4/2 | SIMULATION - Protein Simulation I | 25s1 | 23s1 | 25s1 | |
| 4/7 | SIMULATION - Protein Simulation II | 25s2 | 23s2 | 25s2 | |
| 4/9 | SIMULATION - Protein Simulation III | 25s3 | 23s3 | 25s3 | |
| 4/14 | SIMULATION - Protein Simulation IV | 25s4 | 23s4 | 25s4 | |
| 4/16 | SIMULATION - Protein Simulation V | 25s5 | 23s5 | 25s5 | |
| 4/21 | Quiz on 2nd Half | quiz2 study guide, Quiz2 Key | |||
| 4/23 | Final Presentations | ||||
| 4/25 | *YALE* Classes end; Reading period begins | ||||
| 5/1 | *YALE* Final examinations begin | ||||
| 5/7 | *YALE* Final examinations end |
| Lecture Slide Pack and Video |
|---|
| # |
| 25i1-i2a |
| 25i2b |
| 23d3 |
| 23d4 |
| 25d1 |
| 25d2 |
| 25d5 |
| 25m3 |
| 25m4 |
| 25m5 |
| 25m6a |
| 25m6b |
| 25m7 |
| 25m8a8b |
| 25m8c |
| 25t3 |
| 25t4 |
| 25m9a |
| 25m9c |
| 25m9e |
| 25t1 |
| 25t2 |
| 25m10a |
| 25m10b |
| 25m10c |
| 25m10e |
| 25m11a |
| 25m11b |
| 25m12a |
| 25m12b |
| 25s1 |
| 25s2 |
| 25s3 |
| 25s4 |
| 25s5 |
See lab permissions statement in relation to resusing any of the above material.