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In (at least pandoc's) markdown, % has to be escaped (and I personally got encountered this mistakes from time to time.) i.e. write them as \%.

I bet if you use markdown: False then this won't be a problem.

Then the next question is if there should be an option to "intelligently" fix this common markdown mistakes in pandoc. I don't think it should, because as long as markdown: True then the cells should conform to (pandoc's) markdown spec so I don't think exceptional case should be made in this case.

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Answer selected by ickc
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