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Changelog

[My 30, 2025]

add cmd scalex in addition to SCALEX add cmd fragment to make peak matrix and gene activity score add annotate function in analysis.py with filtering pseudogenes

[Dec 20, 2024]

Added

  • Add plot track in plot.py
  • Add cache genome folder .cache/genome/
  • Add gene_sets for annotate in analysis.py

[October 18, 2024]

Added

  • CHANGELOG
  • Add analysis.py for annotation
  • Modify the embedding and add plot_expr to enable gene expression across batchßß

[April 29, 2024]

Added

  • CHANGELOG
  • pyproject.toml to enable test
  • Enable query and reference in the same figure in projection

Replace

    • Replace SCALE.py with SCALE