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Hadrien Vroylandt
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@@ -129,6 +129,14 @@ One key motivation behind the writing of folie was performance.
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Likelihood calculation scales linearly with the data size, and with the model complexity, making optimization potentially slow. Furthermore, Langevin optimization can be integrated in a scheme for optimizing collective variables [@mouaffac2023], in which case a large number of model optimizations must be performed before collective variable optimization converges. When running folie in a shared-memory multiprocessor environment, likelihood computation is performed in a data-parallel way over the projected simulation trajectories.
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# Practical use
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## Usage workflow
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![Typical workflow in folie. This basic workflow is illustrated in this [example script in the repository](https://github.com/langevinmodel/folie/blob/main/examples/plot_example.py). Several options are available for the model definition and the model estimation. \label{fig:worklow}](workflow.png)
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# Perspectives
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Further developments are in progress, in particular more widely applicable forms of dynamics, namely underdamped and generalized Langevin dynamics.

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