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Minor refinement in filefix option description
Refine output options and add merge command
Refine all option tables, and add filter
Add output prefix/suffix and compression
Add citation and gz doc
Update wiki to new global command structure.
Update CLI Formatter.
Add write option to multiplicities command.
Minor fix in doc
Add flag to multiplicity command.
Update multiplicity doc.
Update multiplicities doc.
Add multiplicity command.