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Pipeline (7101-G and 7115) and workflow updates (v2.0.0) #191

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Pipeline (7101-G and 7115) and workflow updates (v2.0.0)

Pipeline (7101-G and 7115) and workflow updates (v2.0.0) #191

Triggered via pull request June 9, 2025 22:41
@bnovak32bnovak32
synchronize #154
DEV_RNAseq_vG
Status Failure
Total duration 16s
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check_typos.yml

on: pull_request
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10 errors and 8 warnings
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L1147
contraint ==> constraint
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L1095
contraint ==> constraint
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L1014
comparision ==> comparison
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L1011
comparision ==> comparison
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L986
contraint ==> constraint
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L978
accomodate ==> accommodate
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L901
contraint ==> constraint
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L569
indicies ==> indices
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L567
postive ==> positive
Discover typos with codespell: Methyl-Seq/Workflow_Documentation/isa_to_runsheet_plugins/dp_tools__methylseq_dna/checks.py#L193
occured ==> occurred
Discover typos with codespell: 3rd_Party_Licenses/Microarray_Affymetrix_3rd_Party_Software_Licenses/tibble_LICENSE.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: 3rd_Party_Licenses/Microarray_Affymetrix_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: 3rd_Party_Licenses/Amplicon_and_Metagenomics_3rd_Party_Software_Licenses/kofam_scan_LICENSE.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: 3rd_Party_Licenses/RNAseq_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: 3rd_Party_Licenses/Microarray_Agilent_1_Channel_3rd_Party_Software_Licenses/PYTHON_LICENSE.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: Microarray/images/GL-microarray-overview.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: Licenses/Microarray_GPL-3.0_with_Additional_Requirements_License.pdf#L0
Cannot decode file using encoding "utf-8"
Discover typos with codespell: Licenses/Amplicon_and_Metagenomics_NOSA_License.pdf#L0
Cannot decode file using encoding "utf-8"