Skip to content

Commit 7beea8d

Browse files
Typo fixes
1 parent e044b00 commit 7beea8d

File tree

1 file changed

+2
-6
lines changed
  • Amplicon/Illumina/Workflow_Documentation/NF_AmpIllumina

1 file changed

+2
-6
lines changed

Amplicon/Illumina/Workflow_Documentation/NF_AmpIllumina/README.md

Lines changed: 2 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -35,7 +35,7 @@ The table below details the default maximum resource allocations for individual
3535
5a. [Main outputs](#5a-main-outputs)
3636
5b. [Resource logs](#5b-resource-logs)
3737

38-
6. [Post-processing](#7-post-processing)
38+
6. [Post-processing](#6-post-processing)
3939

4040
<br>
4141

@@ -169,10 +169,6 @@ nextflow run main.nf \
169169
* `slurm` - instructs Nextflow to use the [Slurm cluster management and job scheduling system](https://slurm.schedmd.com/overview.html) to schedule and run the jobs on a Slurm HPC cluster
170170
* `--target_region` - Specifies the amplicon target region to be analyzed, available option are: 16S, 18S, or ITS
171171

172-
*Required only if you would like to pull and process data directly from OSDR*
173-
174-
* `--accession` - A GeneLab / OSD accession number e.g. GLDS-487.
175-
176172

177173
**Additional Required Parameters For Approach 1:**
178174

@@ -189,7 +185,7 @@ nextflow run main.nf \
189185
* `--R_primer` - Reverse primer sequence
190186

191187

192-
**Additional [Optional] Parameters For ALL Approaches**
188+
**Additional [Optional] Parameters For All Approaches**
193189
> *Note: See `nextflow run -h` and [Nextflow's CLI run command documentation](https://nextflow.io/docs/latest/cli.html#run) for more options and details on how to run Nextflow.*
194190
195191
* `--errorStrategy` - Error handling strategy for Nextflow processes . If processes fail, use "ignore" to allow the workflow to continue running (default: "terminate")

0 commit comments

Comments
 (0)