Skip to content

Commit f766a56

Browse files
committed
Added workflow documentation of QC metrics output
1 parent 4fd24e2 commit f766a56

File tree

1 file changed

+5
-0
lines changed
  • RNAseq/Workflow_Documentation/NF_RCP

1 file changed

+5
-0
lines changed

RNAseq/Workflow_Documentation/NF_RCP/README.md

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -354,6 +354,11 @@ The outputs from the Analysis Staging and V&V Pipeline Subworkflows are describe
354354
- processing_info/nextflow_log_GLbulkRNAseq.txt (Nextflow execution logs captured via `nextflow log`)
355355
- processing_info/nextflow_run_command_GLbulkRNAseq.txt (Exact command line used to initiate the workflow)
356356
357+
**QC metrics summary**
358+
359+
- Output:
360+
- GeneLab/qc_metrics_GLbulkRNAseq.csv (comma-separated text file listing a summary of qc metrics and metadata for the dataset)
361+
- GeneLab/qc_validation_GLbulkRNAseq.txt (a validation report for qc_metrics generation that lists any missing entries in the qc_metrics file)
357362
<br>
358363
359364
Standard Nextflow resource usage logs are also produced as follows:

0 commit comments

Comments
 (0)