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Looks like I have solved this problem.
My source and target projects were named differently and therefore the Teams were also named differently.
When I did the initial migration I did not do any custom mapping between Project or Team names.
I am not sure if I should have done or how I could do it.

But, I solved it by cleaning my target project (removed all migrated work items, removed migrated team, removed migrated iterations and area paths). Then I changed the name of my source project to match the target project name (the Team name was also renamed).
Then I did the Work Item migration again.

Now all the migrated work items are against the expected team, board and backlog in the target …

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Answer selected by mkennerley
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