Update update-cv.yml

Author: oddish3

.github/workflows/update-cv.yml

@@ -1,59 +1,67 @@
 name: Monthly CV Update
-
 on:
   schedule:
     - cron: '0 0 1 * *'        # Runs at 00:00 UTC on the 1st of each month
   workflow_dispatch:
-
 jobs:
   update-cv:
     runs-on: ubuntu-latest
     permissions:
       contents: write
-
     steps:
       - name: Check out repository
         uses: actions/checkout@v4
         with:
           ref: main
           fetch-depth: 0
-
+      
       - name: Set up R
         uses: r-lib/actions/setup-r@v2
-
-      - name: Install R dependencies
+        with:
+          use-public-rspm: true
+      
+      - name: Install system dependencies
         run: |
-          Rscript -e 'install.packages(c("rorcid","rcrossref","RefManageR","dplyr","stringr","jsonlite"), repos = "https://cloud.r-project.org")'
-
+          sudo apt-get update
+          sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev
+      
+      - name: Setup R dependencies
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          packages: |
+            any::rorcid
+            any::rcrossref
+            any::RefManageR
+            any::dplyr
+            any::stringr
+            any::jsonlite
+      
       - name: Refresh publications
         run: Rscript update_pubs.R
-
+      
       - name: Set up Typst
         uses: typst-community/setup-typst@v4
-
+      
       - name: Install Font Awesome
         run: |
           sudo apt-get update
           sudo apt-get install -y fonts-font-awesome
           sudo fc-cache -fv
-
+      
       - name: Compile CV (Typst)
         run: typst compile cv/resume.typ
-
+      
       - name: Commit updated CV
         run: |
           git config --global user.name "github-actions[bot]"
           git config --global user.email "github-actions[bot]@users.noreply.github.com"
-
           if git diff --quiet -- cv/resume.pdf cv/resume.typ research/index.qmd 2>/dev/null; then
             echo "No changes to CV, skipping commit"
             exit 0
           fi
-
           git pull --rebase origin main || echo "Pull failed, continuing anyway"
           git add cv/resume.pdf cv/resume.typ research/index.qmd
           git commit -m "Automated CV update [skip ci]" || echo "No changes to commit"
-
           for i in {1..3}; do
             if git push origin HEAD:main; then
               echo "Push successful on attempt $i"
@@ -65,4 +73,4 @@ jobs:
             fi
           done
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}