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NAMESPACE
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89 lines (88 loc) · 2.39 KB
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# Generated by roxygen2: do not edit by hand
export(batch_PEAKS_tags)
export(batch_tags)
export(build_database)
export(calc_neutral_mass)
export(calc_ppm)
export(candidate_ratings)
export(create_datamodel)
export(delete_database)
export(delete_organism)
export(delete_sample)
export(digest_ent_protein)
export(generate_PEAKS_tags)
export(generate_tags)
export(get_sample_ids)
export(jaccard_index)
export(jaccard_index_strong)
export(leader_cluster)
export(leader_similarity_cluster)
export(load_rdata_into)
export(optimize_database)
export(organism_info)
export(overlap_coefficients)
export(overlap_coefficients_strong)
export(parse_NCBI_taxonomy)
export(parse_ent)
export(peptide_matches)
export(populate_organism)
export(populate_taxon)
export(ppm_to_da)
export(process_overlap)
export(process_strong)
export(query_overlap_peptides)
export(sample_count_by_organism)
export(sample_info)
export(sample_overlap)
export(sample_strong_count_by_organism)
export(save_database_hits)
export(upload_organism)
export(upload_sample)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbExecute)
importFrom(DBI,dbGetQuery)
importFrom(DBI,dbWriteTable)
importFrom(DBI,sqlInterpolate)
importFrom(MakeSearchSim,digestPeptides)
importFrom(MakeSearchSim,filterNovor)
importFrom(MakeSearchSim,importSingleNovor)
importFrom(OrgMassSpecR,Digest)
importFrom(RMariaDB,MariaDB)
importFrom(assertthat,assert_that)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,pull)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(magrittr,"%>%")
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(plyr,adply)
importFrom(plyr,ldply)
importFrom(purrr,map)
importFrom(readr,read_delim)
importFrom(readr,read_file)
importFrom(readr,write_csv)
importFrom(rlang,.data)
importFrom(stats,dist)
importFrom(stats,setNames)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_match)
importFrom(stringr,str_match_all)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_trim)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,separate_rows)
importFrom(tidyselect,everything)
importFrom(utils,read.csv)
importFrom(utils,write.csv)