Skip to content

error with circlator #179

@sekhwal

Description

@sekhwal

Hi, I am getting following error:

Traceback (most recent call last):
File "/home/anaconda3/envs/bioinfo/bin/circlator", line 58, in
exec('circlator.tasks.' + task + '.run()')
File "", line 1, in
File "/home/anaconda3/envs/bioinfo/lib/python3.7/site-packages/circlator/tasks/all.py", line 74, in run
circlator.versions.get_all_versions(None, raise_error=True, assembler=options.assembler)
File "/home/anaconda3/envs/bioinfo/lib/python3.7/site-packages/circlator/versions.py", line 15, in get_all_versions
external_progs.check_all_progs(verbose=False, raise_error=raise_error, filehandle=filehandle, debug=debug, assembler=assembler)
File "/home/anaconda3/envs/bioinfo/lib/python3.7/site-packages/circlator/external_progs.py", line 105, in check_all_progs
make_and_check_prog(prog, verbose=verbose, raise_error=raise_error, filehandle=filehandle, debug=debug, required=prog==assembler)
File "/home/anaconda3/envs/bioinfo/lib/python3.7/site-packages/circlator/external_progs.py", line 82, in make_and_check_prog
handle_error('Version of ' + name + ' too low. I found ' + p.version + ', but must be at least ' + min_versions[name] + '. Found here:\n' + p.from_which, raise_error=raise_error)
File "/home/anaconda3/envs/bioinfo/lib/python3.7/site-packages/circlator/external_progs.py", line 53, in handle_error
raise Error(message + '\nCannot continue')
circlator.external_progs.Error: Version of nucmer too low. I found 1, but must be at least 3.1. Found here:
/home/anaconda3/envs/bioinfo/bin/nucmer
Cannot continue

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions