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Allele dosage are 2x too small in males for X chromosome

Status: Open.

#216 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Feb 5, 2026

Mismatch between haplotype output and genotype output

Status: Open.

#211 In AlphaGenes/AlphaPeel;

· XingerTang opened on Jan 29, 2026

IO multithreading argument not working

bugSomething isn't workingSomething isn't working

Status: Open.

#210 In AlphaGenes/AlphaPeel;

· XingerTang opened on Jan 22, 2026

Replace A Whalen's email

documentationImprovements or additions to documentationImprovements or additions to documentation

package

Status: Open.

#207 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Dec 20, 2025

Report version via -version

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#204 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Dec 19, 2025

Calculate accuracy metrics by sex

enhancementNew feature or requestNew feature or request

Status: Open.

#203 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Dec 18, 2025

Add switch error rate metric in accuracy tests

insightsPossible future workPossible future work

Status: Open.

#202 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Dec 18, 2025

x_chr example

insightsPossible future workPossible future work

Status: Open.

#199 In AlphaGenes/AlphaPeel;

· AprilYUZhang opened on Nov 9, 2025

One phenotype to multi-locus genotype

insightsPossible future workPossible future work

Status: Open.

#197 In AlphaGenes/AlphaPeel;

· RosCraddock opened on Oct 29, 2025

Add support for Y chromosome imputation

insightsPossible future workPossible future work

Status: Open.

#194 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Sep 25, 2025

There is one fixed error value in Peeling.py that should be parameter

insightsPossible future workPossible future work

Status: Open.

#193 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on May 15, 2025

Change estimation limits of base population allele frequency from [0.01, 0.99] to something wider

insightsPossible future workPossible future work

Status: Open.

#185 In AlphaGenes/AlphaPeel;

· gregorgorjanc opened on Feb 28, 2025