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[Feature Request] Can BioAlignment support gap_incentive ?

enhancement

feature-request

Status: Open.

#92 In BioJulia/BioAlignments.jl;

· SeqCrafter opened on Dec 5, 2025

Add a cigar method and BioAlignments.Alignment constructor for XAM.jl optimisation

enhancement

feature-request

Status: Open.

#87 In BioJulia/BioAlignments.jl;

· CiaranOMara opened on Oct 15, 2022

Friendly request to @deprecate API changes via semver

docsThings related to documentationThings related to documentation

enhancement

Status: Open.

#84 In BioJulia/BioAlignments.jl;

· dehann opened on Aug 24, 2022

Refactor tests

enhancement

Status: Open.

#81 In BioJulia/BioAlignments.jl;

· kescobo opened on Jun 16, 2022

Weird error with AffineGapScoreModel()

Status: Open.

#79 In BioJulia/BioAlignments.jl;

· jakobnissen opened on Jun 15, 2022

Alignment of 2 LongAminoAcidSeq with AffineGapScoreModel from docs goes out of bounds

Status: Open.

#75 In BioJulia/BioAlignments.jl;

· kool7d opened on May 26, 2022

Extract start and end positions from a PairwiseAlignment

feature-request

Status: Open.

#73 In BioJulia/BioAlignments.jl;

· rohanmaddamsetti opened on Mar 28, 2022

AlignmentAnchor method signature

Status: Open.

#69 In BioJulia/BioAlignments.jl;

· CiaranOMara opened on Feb 12, 2022

OP_BACK has no use?

Status: Open.

#63 In BioJulia/BioAlignments.jl;

· jakobnissen opened on Jan 27, 2022

The API of accessing fields of BioAlignments

Status: Open.

#58 In BioJulia/BioAlignments.jl;

· jakobnissen opened on Oct 26, 2021

What does the two integer fields in Alignment do?

Status: Open.

#57 In BioJulia/BioAlignments.jl;

· jakobnissen opened on Oct 13, 2021

Get reference and query from PairwiseAlignment

Status: Open.

#55 In BioJulia/BioAlignments.jl;

· jakobnissen opened on Jul 23, 2021