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Integration branch for NovaSeqX changes#250

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RasmusBurge-CG wants to merge 12 commits intomasterfrom
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Integration branch for NovaSeqX changes#250
RasmusBurge-CG wants to merge 12 commits intomasterfrom
integration-branch-novaseqx

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@RasmusBurge-CG RasmusBurge-CG commented Apr 1, 2026 •
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Added

  • Added chr13_ratio, chr18_ratio and chr21_ratio, in the response body of /v2/sample/

Changed

  • The bcrypt Python package removed the about submodule in version 4.1.0 (released late 2023). Before that, the version string lived at bcrypt.about.version, which is exactly what passlib reads to detect which bcrypt backend it's working with. Locked version passlib and bcrypt.

Fixed

Steps to consider while deploying

  • Configuration changes:
  • Documentation updates:
  • Inform users by email:

Review:

  • Code approved by
  • Tests executed on stage by: (Document the test done with screen shots and description.)
  • "Merge and deploy" approved by

This version is a:

  • MAJOR - when you make incompatible API changes
  • MINOR - when you add functionality in a backwards compatible manner
  • PATCH - when you make backwards compatible bug fixes or documentation/instructions

@RasmusBurge-CG RasmusBurge-CG requested a review from a team as a code owner April 1, 2026 16:39
@clingen-sthlm clingen-sthlm temporarily deployed to stage April 1, 2026 17:31 Inactive
@clingen-sthlm clingen-sthlm temporarily deployed to stage April 2, 2026 11:54 Inactive
@clingen-sthlm clingen-sthlm temporarily deployed to stage April 2, 2026 12:06 Inactive
islean and others added 6 commits April 8, 2026 10:55
@islean
Parse the data set in the batch request (#253) (patch)
05902d2 
### Added

- Parses the data set that will be sent in the request towards the batch endpoint and uses it to create the Batch database object.
@islean
Add ratio warnings (#255) (patch)
6788be9 
Closes Clinical-Genomics/statina-ui#227.

### Changed

- Z_score warnings are changed to ratio warnings and are calculated using the ratios instead
@islean
FFY plot (#256) (patch)
68e449b 
### Added

- FFY box plot
@RasmusBurge-CG @islean
New Ratio plot endpoint (#251)
361c916 
Renamed endpoint

---------

Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>
@islean
Add parsing and box plots of uncorrected ratios (#257)
fda7bb0
@islean @RasmusBurge-CG
Filter normal values on dataset (#263)
294c740 
Adding filtering for dataset on plots

---------

Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>
@clingen-sthlm clingen-sthlm temporarily deployed to stage April 13, 2026 09:07 Inactive
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3 participants

@RasmusBurge-CG @clingen-sthlm @islean