GitHub - FaithGriffin/CandidaPhylo: Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

To run script

Download Anaconda for Linux
Run conda install -c conda-forge miniwdl command.
Edit Candida-Pylo.inputs.json. Specifically, CandidaPhylo.input_samples, CandidaPhylo.input_fastqs_1, and CandidaPhylo.input_fastqs_2.
Run miniwdl run [-i INPUT.json] [-o OUT.json]

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
.dockstore.yml		.dockstore.yml
Candida-Phylo.inputs.json		Candida-Phylo.inputs.json
Candida-Phylo.wdl		Candida-Phylo.wdl
README.md		README.md