Github Actions

.github/workflows/R-CMD-check.yaml

@@ -1,39 +1,32 @@
 name: R-CMD-check
-# Controls when the action will run.
+
 on:
   push:
     branches:
       - main
   pull_request:
     branches:
-      - '**' # matches every branch
-
+      - main
   schedule:
-    # * is a special character in YAML so you have to quote this string
-    # Launch run at 6am the 1st of every month.
-    - cron:  '0 6 1 * *'
-
-  # Allows you to run this workflow manually from the Actions tab
+    - cron: '0 6 1 * *' # Run at 6 AM on the 1st of each month
   workflow_dispatch:
 
 jobs:
   R-CMD-check:
-    # Don't run scheduled job on forks, only in main repository.
-    if: (github.event_name == 'schedule' && github.repository == 'JGCRI/hector') || (github.event_name != 'schedule')
-
-    runs-on: ${{ matrix.config.os }}
+    if: github.event_name != 'schedule' || github.repository == 'JGCRI/hector'
 
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    runs-on: ${{ matrix.os }}
+    name: ${{ matrix.os }} (${{ matrix.r }})
 
     strategy:
       fail-fast: false
       matrix:
-        config:
-          - {os: macos-latest,   r: 'release'}
-          - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
-          - {os: ubuntu-latest,   r: 'oldrel-1'}
+        os: [macos-latest, windows-latest, ubuntu-latest]
+        r: ['release', 'oldrel-1']
+        include:
+          - os: ubuntu-latest
+            r: 'devel'
+            http-user-agent: 'release'
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -46,8 +39,8 @@ jobs:
 
       - uses: r-lib/actions/setup-r@v2
         with:
-          r-version: ${{ matrix.config.r }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
+          r-version: ${{ matrix.r }}
+          http-user-agent: ${{ matrix.http-user-agent || '' }}
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2

.github/workflows/command-line-tests.yaml

@@ -0,0 +1,44 @@
+name: Build & C++ Unit Tests
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+  schedule:
+    - cron: '0 6 1 * *' # Run at 6 AM on the 1st of each month
+  workflow_dispatch:
+
+jobs:
+  executable-build:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Install dependencies
+        run: |
+          sudo apt-get update
+          sudo apt install -y libboost-dev
+      - name: Build and run
+        run: |
+          set -e  # Exit on failure
+          make hector
+          bash ./test_hector.sh ./src/hector
+
+  gunit-tests:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Install dependencies
+        run: |
+          sudo apt-get update
+          sudo apt install -y libgtest-dev libboost-filesystem-dev libboost-system-dev
+          cd /usr/src/gtest && sudo cmake . && sudo make && sudo cp lib/*.a /usr/local/lib
+      - name: Build and run unit tests
+        run: |
+          set -e  # Exit on failure
+          make testing
+          ./src/unit-testing/hector-unit-tests

.github/workflows/leeyabot.yaml

@@ -0,0 +1,57 @@
+name: Leeyabot Report
+
+on:
+  workflow_dispatch:  # Allows manual triggering from GitHub UI
+  pull_request:
+    paths:
+      - "scripts/leeyabot.Rmd"  # Runs when report.Rmd changes in a PR
+
+jobs:
+  render-and-push:
+    runs-on: ubuntu-latest
+    name: Build and run leeyabot
+    env:
+        GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v3
+      - uses: r-lib/actions/setup-r@v2
+      - uses: r-lib/actions/setup-pandoc@v2
+      - uses: quarto-dev/quarto-actions/setup@v2
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+            packages:
+                any::ggplot2
+                any::rmarkdown
+                any::dplyr
+                any::remotes
+                any::here
+                any::knitr
+                any::Rcpp
+                any::BH
+
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v2
+
+      - name: Install System Dependencies (including Pandoc)
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y pandoc
+          sudo apt-get install libcurl4-openssl-dev
+          sudo apt-get install -y libjs-mathjax
+      - name: Install package
+        run: R CMD INSTALL .
+
+      - name: Render RMarkdown
+        run: R -e 'rmarkdown::render("scripts/leeyabot.Rmd", output_format="github_document")'
+
+      - name: Comment Report on PR
+        run: |
+            echo ":bar_chart: **Report Generated** :robot:" >> comment.txt
+            echo "" >> comment.txt
+            echo "Here is the latest automated report:" >> comment.txt
+            echo "" >> comment.txt
+            cat scripts/leeyabot.md >> comment.txt  # Append the report contents
+            gh pr comment ${{ github.event.pull_request.number }} --body-file comment.txt
+        env:
+            GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+

.github/workflows/pkgdown.yaml

@@ -5,7 +5,7 @@ on:
     branches: [main]
   pull_request:
     branches:
-      - '**' # matches every branch
+      - main
   release:
     types: [published]
   workflow_dispatch: