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README: add MCC metric and update author order per manuscript #22

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jananiravi merged 1 commit into from
May 28, 2026
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README: add MCC metric and update author order per manuscript #22

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3 changes: 2 additions & 1 deletion README.Rmd
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Expand Up @@ -129,6 +129,7 @@ Required columns:
- `type`: Count or binary features
- `bal_acc`: Balanced accuracy
- `f1`: F1 score
- `mcc`: Matthews correlation coefficient
- `nmcc`: Normalized Matthews correlation coefficient
- Additional columns for other metrics

Expand Down Expand Up @@ -166,7 +167,7 @@ amRviz/
If you use `amRviz` in your research, please cite:

```
Brenner E, Ghosh A, Wolfe E, Boyer E, Vang C, Lesiyon R, Mayer D, Ravi J. (2026).
Brenner E, Ghosh A, Boyer E, Vang C, Wolfe E, McKim A, Lesiyon R, Mayer D, Ravi J. (2026).
amR: an R package suite to predict antimicrobial resistance in bacterial pathogens.
R package version 0.99.0.
https://github.com/JRaviLab/amR
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3 changes: 2 additions & 1 deletion README.md
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Expand Up @@ -127,6 +127,7 @@ results/
| `strat_value_test` | Tested-on country or year (cross models only) |
| `bal_acc` | Balanced accuracy |
| `f1` | F1 score |
| `mcc` | Matthews correlation coefficient |
| `nmcc` | Normalized Matthews correlation coefficient |

### Top features (`*_ML_top_features.parquet`)
Expand Down Expand Up @@ -181,7 +182,7 @@ amRviz/
If you use `amRviz` in your research, please cite:

```
Brenner E, Ghosh A, Wolfe E, Boyer E, Vang C, Lesiyon R, Mayer D, Ravi J. (2026).
Brenner E, Ghosh A, Boyer E, Vang C, Wolfe E, McKim A, Lesiyon R, Mayer D, Ravi J. (2026).
amR: an R package suite to predict antimicrobial resistance in bacterial pathogens.
R package version 0.99.0.
https://github.com/JRaviLab/amR
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