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update geneenrichment to be less strict#1529

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jwilber wants to merge 6 commits intomainfrom
jwilber/codon-gene-enrichment-eval
Open

update geneenrichment to be less strict#1529
jwilber wants to merge 6 commits intomainfrom
jwilber/codon-gene-enrichment-eval

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@jwilber jwilber commented Mar 20, 2026

Description

Usage

TODO: Add code snippet

Type of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Refactor
  • Documentation update
  • Other (please describe):

CI Pipeline Configuration

Configure CI behavior by applying the relevant labels. By default, only basic unit tests are run.

  • ciflow:skip - Skip all CI tests for this PR
  • ciflow:notebooks - Run Jupyter notebooks execution tests for bionemo2
  • ciflow:slow - Run slow single GPU integration tests marked as @pytest.mark.slow for bionemo2
  • ciflow:all - Run all tests (unit tests, slow tests, and notebooks) for bionemo2. This label can be used to enforce running tests for all bionemo2.
  • ciflow:all-recipes - Run tests for all recipes (under bionemo-recipes). This label can be used to enforce running tests for all recipes.

Unit tests marked as @pytest.mark.multi_gpu or @pytest.mark.distributed are not run in the PR pipeline.

For more details, see CONTRIBUTING

Note

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Pre-submit Checklist

  • I have tested these changes locally
  • I have updated the documentation accordingly
  • I have added/updated tests as needed
  • All existing tests pass successfully

Signed-off-by: jwilber <jwilber@nvidia.com>
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copy-pr-bot bot commented Mar 20, 2026

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coderabbitai bot commented Mar 20, 2026

Important

Review skipped

Auto reviews are disabled on this repository. Please check the settings in the CodeRabbit UI or the .coderabbit.yaml file in this repository. To trigger a single review, invoke the @coderabbitai review command.

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Use the checkbox below for a quick retry:

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  • Commit unit tests in branch jwilber/codon-gene-enrichment-eval

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jwilber added 5 commits March 20, 2026 19:56
Signed-off-by: jwilber <jwilber@nvidia.com>
Signed-off-by: jwilber <jwilber@nvidia.com>
Signed-off-by: jwilber <jwilber@nvidia.com>
Signed-off-by: jwilber <jwilber@nvidia.com>
Signed-off-by: jwilber <jwilber@nvidia.com>
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