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Add missing figures to report#1004

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tsalo wants to merge 3 commits intomasterfrom
missing-figures
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Add missing figures to report#1004
tsalo wants to merge 3 commits intomasterfrom
missing-figures

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@tsalo
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@tsalo tsalo commented Nov 18, 2025

Closes #947.

  • T1 to MNI registration (<source_entities>_t1w2mni.svg)
  • diffusion summary (<source_entities>_desc-summary_dwi.html)
  • DWI sampling scheme (<source_entities>_desc-samplingscheme_dwi.gif)
  • SDC
  • bias correction (<source_entities>_desc-biascorr_dwi.svg, <source_entities>_desc-biascorrpost_dwi.svg): DSDTI_synfmap
  • b0 reference image
  • dMRI and anatomical coregistration
  • DWI summary

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tsalo commented Nov 20, 2025

I'm seeing all of the figures in one HTML or another, so I think the problem must be that the entity selection step is somehow excluding some files because they have different entities from the "source" file (whatever that is), probably because of how entities are changed when QSIPrep concatenates data across runs, acquisitions, etc.

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Preprocessing visualizations missing from .html report in 1.0.0rc2

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