Skip to content

Pin pybids version to fix upath protocol compatibility issue#1026

Open
arovai wants to merge 2 commits intoPennLINC:masterfrom
arovai:master
Open

Pin pybids version to fix upath protocol compatibility issue#1026
arovai wants to merge 2 commits intoPennLINC:masterfrom
arovai:master

Conversation

@arovai
Copy link
Contributor

@arovai arovai commented Feb 10, 2026

Fixes #1025

The error 'Protocol not known: bids' occurred due to version incompatibility between pybids and upath. This commit pins pybids to version >= 0.15.0, < 0.16.0 to ensure a compatible version is installed that works properly with the rest of the dependencies.

Fixes PennLINC#1025

The error 'Protocol not known: bids' occurred due to version incompatibility
between pybids and upath. This commit pins pybids to version >= 0.15.0, < 0.16.0
to ensure a compatible version is installed that works properly with the rest
of the dependencies.
@welcome
Copy link

welcome bot commented Feb 10, 2026

Thanks for opening this pull request! We have detected this is the first time for you to contribute to QSIPrep. Please check out our contributing guidelines.
These are guidelines intended to make communication easier by describing a consistent process, but don't worry if you don't get it everything exactly "right" on the first try.
We invite you to list yourself as a QSIPrep contributor, so if your name is not already mentioned, please modify the CITATION.cff file with your data. If you do so, your name will be listed as an author at the next release. Please add yourself to the list in alphabetical order, keeping Cieslak, Matthew as first and Satterthwaite, Theodore D. as last authors, e.g.:

  ...
  - family-names: <LastName>
    given-names: <FirstName>
    affiliation: <Affiliation>
    orcid: <Id>
  ...
... ```
Of course, if you want to opt out this time there is no problem at all with adding your name later. You will be always welcome to add it in the future whenever you feel it should be listed.

@codecov-commenter
Copy link

codecov-commenter commented Feb 10, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
⚠️ Please upload report for BASE (master@7dd7eb7). Learn more about missing BASE report.

Additional details and impacted files
@@            Coverage Diff            @@
##             master    #1026   +/-   ##
=========================================
  Coverage          ?   46.28%           
=========================================
  Files             ?       65           
  Lines             ?     9814           
  Branches          ?     1088           
=========================================
  Hits              ?     4542           
  Misses            ?     5036           
  Partials          ?      236           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@tsalo tsalo requested a review from mattcieslak February 18, 2026 14:04
@tsalo
Copy link
Member

tsalo commented Mar 12, 2026

I'm hoping to overhaul the management of Python dependencies in #1028 soon so I may re-implement this once that is merged.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Could not start qsiprep 1.1.1, ValueError: Protocol not known: 'bids'

3 participants