This project compares and evaluates different mitogenome assemblers. The repo contains scripts for program installation, data download, and assemblies.
Parts of the code have been used in a bigger project to assemble and compare the mitogenomes of biting midges, which has been published here:
Milián-García Y., Hempel C. A., Janke L. A., Young R. G., Furukawa-Stoffer T., Ambagala A., Steinke D., Hanner R. H. (2022): Mitochondrial genome sequencing, mapping, and assembly benchmarking for Culicoides species (Diptera: Ceratopogonidae). BMC genomics 23:584. https://doi.org/10.1186/s12864-022-08743-x