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Improve pairwise registration: multi-scale ITK, shift filtering, motor-position mode #86

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Merged
FIrgolitsch merged 10 commits into from
Mar 25, 2026
Merged

Improve pairwise registration: multi-scale ITK, shift filtering, motor-position mode #86

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0aad699
Improve pairwise registration and add shift/metrics utilities
FIrgolitsch Mar 17, 2026
ed78308
Add script to correct encoder glitch spikes from shifts CSV
FIrgolitsch Mar 21, 2026
10aeb15
Remove outlier filtering options and related logic from argument pars…
FIrgolitsch Mar 21, 2026
a7881fc
Enhance outlier shift filtering by introducing 'rehome' method to dis…
FIrgolitsch Mar 21, 2026
cf5e1a1
Remove commented-out code and unnecessary imports in ITKRegistration …
FIrgolitsch Mar 23, 2026
16c25b4
Added documentation and consolidated metrics
FIrgolitsch Mar 23, 2026
988d068
Moved functions from script to core modules
FIrgolitsch Mar 23, 2026
4327361
Refactor linumpy module structure and update imports
FIrgolitsch Mar 23, 2026
0903b4b
Add correct_tile_offset_shifts function and update rehoming detection…
FIrgolitsch Mar 21, 2026
d8d375a
Enhance shift correction and registration processes by refining artif…
FIrgolitsch Mar 22, 2026
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1 change: 1 addition & 0 deletions linumpy/io/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
from .allen import *
from .data_io import *
from .zarr import *
from .npz import write_numpy, read_numpy, read_numpy_data, read_numpy_metadata
0 linumpy/utils/data_io.py → linumpy/io/data_io.py
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2 changes: 2 additions & 0 deletions linumpy/shifts/__init__.py
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Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
# -*- coding: utf-8 -*-
from .utils import * # noqa: F401, F403
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