Neurology Informatics

Data Science Team, Lancashire Teaching Hospitals NHS Foundation Trust

Introduction

Reproducible neurology informatics research centered around OMOP and related data sources.

Getting started

1. Clone the repository
2. Create a new virtual environment using either conda, pipenv or similar and activate that environment.
3. Create a .dbt directory in your user profile directory (typically C:/Users/User.Name) and copy profiles_sample.yml into .dbt and rename it to profiles.yml. Modify the file with confguration provided by the data science team.
4. Run pip install -r requirements.txt followed by dbt deps
5. Install the Power User for dbt Core extension for VS Code