PAR-CLIP Analysis

This repository contains an R-based workflow for visualizing PAR-CLIP data, with a focus on comparing RNA-binding intensity across gene categories such as mitochondrial RNAs, pseudogenes, and nuclear genes.

The analysis is intended for publication-quality visualization of RNA–protein interaction datasets.

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Repository Contents

File	Description
boxplot.R	Generates boxplots of RNA-binding intensity across gene categories (mitochondrial, pseudogenes, nuclear) using ggplot2, ggrepel, and ggnewscale.

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Dependencies

R packages

install.packages(c(
  "ggplot2",
  "ggrepel",
  "ggnewscale",
  "RColorBrewer",
  "readxl",
  "dplyr",
  "stringr"
))