pmplots 0.6.1

Bugs fixed

• Fixed a bug introduced in #124, where a hard-coded "ID" was mistakenly
  replaced by a call to pm_col_tad() rather than pm_col_id(). (#131)

pmplots 0.6.0

• A new family of functions lets you update axis and aesthetic labels on plots
  after they are created, looking up column names in a named list or yspec
  object. (#122)

  • pm_gg_labs() builds a label object that can be added (+) to any gg
    object to update axis and aesthetic labels based on the mapped column names.
    It also accepts x_break, y_break, and var_break arguments for
    inserting line breaks into long labels.
  • pm_relabel() is a generic that applies pm_gg_labs() to a gg object,
    a patchwork object (e.g., from eta_covariate() or npde_panel()), or a
    list of gg objects.
  • pmp_relabel_wrap() relabels facet strip labels in plots produced by
    wrap_* functions (e.g., wrap_eta_cont(), wrap_cont_cont()), including
    optional f_break and unit_break arguments for wrapping long strip labels.
  • pmp_relabel_pairs() relabels strip and axis labels in pairs plots (e.g.,
    from eta_pairs()).
  • relabel_at() applies relabeling to specific plots in a named list,
    selected by exact name or regular expression.
  • pm_label_columns() attaches per-column labels to a data frame from a named
    list or yspec object; pm_label_rm() removes them. When a data frame
    labeled this way is passed to a wrap_* function with use_labels = TRUE
    (now the default), the stored labels are used as facet strip titles.
  • pm_gg_break() and pm_gg_break_aes() will break an established aesthetic
    label across two lines; pm_gg_break() identifies labels to break by
    variable name while pm_gg_break_aes() identifies labels to break by
    aesthetic name.
  • pm_label_break() is a ggplot2 labeller function that wraps facet labels
    at a specified character width, for use with facet_wrap(labeller = ...).

• A new aliasing system lets you globally redirect the canonical column names
  assumed by pmplots to the names actually present in your data. (#124)

  • pm_set_aliases() registers one or more alias = canonical pairs (e.g.,
    pm_set_aliases(TAFD = TIME) redirects every place pmplots would look for
    TIME to TAFD instead). Only columns returned by pm_show_canonical()
    can be aliased.
  • pm_aliases() prints currently active aliases; pm_clear_aliases() removes
    them all; pm_show_canonical() lists which column names can be aliased.
  • pm_col_id() returns the subject identifier column name (defaults to "ID";
    controlled globally via options(mrg.id_col = ...)). pm_col_tad() returns
    the time-after-dose column name with alias support. Both are now used
    internally wherever pmplots previously hard-coded "ID" or "TAD".

• eta_covariate(), eta_covariate_list(), npde_covariate(),
  npde_covariate_list(), cwres_covariate(), cwres_covariate_list(), and
  cont_cat_panel() gain a points argument that is forwarded to boxwork()
  when a categorical covariate column is plotted as a boxplot. (#126)

• boxwork() (and downstream functions such as pm_box(), cont_cat(), and
  the eta_cat() / npde_cat() families) accept fill = NULL to suppress the
  default fill, leaving the returned plot open to extension with aes(fill = ...) for grouping by a third variable. (#125)

• Minimum ggplot2 version is now 3.5.2. (#122)

• Minimum R version is now 4.1.0. (#122)

pmplots 0.5.2

Internal compatibility changes

• Fix some test failures related to ggplot2 version 4.0 (#117).

• Add S4 as optional dependency to silence R CMD check warning (#117).

• Prefer ggplot2::is_ggplot() when available (#115).

• Update CI and make tests compatible with GGally 2.3.0 (#114).

pmplots 0.5.1

Bugs fixed

• eta_covariate() now calls eta_cont() rather than eta_cat() when data for
  the x-axis is integer, fixing an error that was generated from eta_cat(),
  which always expects factor, character, or logical; other internal
  updates have been made to ensure consistent treatment of integer data as
  continuous rather than discrete (#104).

pmplots_0.5.1.scorecard.pdf
pmplots_0.5.1.tar.gz

pmplots 0.5.0

• Multiple x and y can be now be passed as a list in addition to
  character vector (#95).

• Vectorized plots (returned as a list of plots) are now named according to the
  x or y data column (#96).

• New function rot_xy() allows rotation of x- or y-axis tick labels for gg
  objects, patchwork objects, or lists of gg or patchwork objects; this
  function uses rot_at() for processing lists (#96).

• New function rot_at() allows rotation of x- or y-axis tick labels of gg
  or patchwork objects or named lists of these objects; the list method
  allows rotation of specific plots in the list by matching the name exactly
  or through a regular expression (#96).

• New function pm_with() allows arrangement of a named list of plots using
  patchwork syntax (#96).

• rot_y() has been updated with a vertical argument, similar to existing
  argument in rot_x() (#96).

scores:
{
  "testing": {
    "check": 1,
    "covr": 0.859
  },
  "documentation": {
    "has_vignettes": 1,
    "has_website": 1,
    "has_news": 1
  },
  "maintenance": {
    "has_maintainer": 1,
    "news_current": 1
  },
  "transparency": {
    "has_source_control": 1,
    "has_bug_reports_url": 1
  }
}

pmplots 0.4.1

• y-axis for cwres_q() and npde_q() changed to remove the word "distribution"
  (#92).

• pmplots now depends on ggplot2 version 3.5.0 or greater (#86).

• Axis titles for conditional weighted residuals are now abbreviated "CWRES" (#83).

Bugs fixed

• Fixed a bug where the wrong y-axis title was getting used in cwres_covariate()
  (#89).

pmplots 0.4.0

• Add a series of functions for standardized, paneled displays (#77, #81).

  • eta_covariate() creates panel of ETA versus continuous or categorical
    covariates.
  • npde_covariate() creates panel of NPDE versus continuous or categorical
    covariates.
  • cwres_covariate() creates panel of CWRES versus continuous or categorical
    covariates.
  • cont_cat_panel() creates panel of continuous versus categorical covariates.
  • npde_panel() creates panel of NPDE-based diagnostics.
  • cwres_panel() creates panel of CWRES-based diagnostics.
  • npde_scatter() creates panel of NPDE-based scatter plots.
  • cwres_scatter() creates panel of CWRES-based scatter plots.
  • npde_hist_q() creates NPDE histogram and Q-Q plot in a panel.
  • cwres_hist_q() creates CWRES histogram and Q-Q plot in a panel.
  • Component plots can be returned in a list which can be arranged via
    with().

• pm_grid() gains tag_levels argument that gets passed to
  patchwork::plot_annotation() (#80).

pmplots 0.3.7

Bugs fixed

• Fix bug where density line was not being drawn by default over npde and
  cwres histograms; the bug came about from incomplete transition to
  changes introduced in ggplot2 v3.4.0 (#74, #75).

pmplots 0.3.6

• Update plotting code to work with new ggplot2 behavior introduced
  in version 3.4.0; pmplots now depends on ggplot2 version 3.4.0
  or greater (#71).

pmplots 0.3.5

• Functions generating default axis titles now have arguments so that
  interpolated customizations can happen when calling the function outside
  of a plot context (#57).

• dv_pred_ipred() heavily refactored for functionality and style; see the
  PR for significant changes / improvements (#54).

• Put stories in yaml format; add script to build validation docs from the
  yaml file (#58, #59).