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  1. RNA-FM RNA-FM Public

    Nature Methods: RNA foundation model (together with RhoFold)

    Jupyter Notebook 367 43

  2. RhoFold RhoFold Public

    Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach

    Python 227 27

  3. Dense-Homolog-Retrieval Dense-Homolog-Retrieval Public

    Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

    Python 123 10

  4. e2efold e2efold Public

    pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

    Python 122 18

  5. RhoDesign RhoDesign Public

    Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.

    Jupyter Notebook 62 5

  6. RiboDiffusion RiboDiffusion Public

    ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

    Python 54 6

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