Changing test_full.config to use the larger test dataset from viralrecon#54
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Changing test_full.config to use the larger test dataset from viralrecon#54
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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maxulysse
approved these changes
Mar 11, 2026
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This PR changes the dataset provided to
test_full.configso it is no longer the same as the dataset provided in thetest.config. To keep things simple I have used the full test dataset fromviralreconas the previous dataset was the smaller test dataset fromviralrecon.In addition to confirming that I could run the test profile (with Singularity rather than Docker in the Codespaces instance), I also confirmed that the test_full profile ran in standard and debug modes.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).