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fix_linting.yml
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Important! Template update for nf-core/tools v4.1.0 Fix linting from a comment #551: Issue comment #2283 (comment) created by maxulysse
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Wire up gVCF output for Parabricks HaplotypeCaller Fix linting from a comment #550: Issue comment #2282 (comment) created by gburnett-nvidia
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Support gVCF output and joint germline calling for Parabricks HaplotypeCaller Fix linting from a comment #549: Issue comment #2261 (comment) created by gburnett-nvidia
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Add Parabricks (GPU-based) DeepVariant Fix linting from a comment #548: Issue comment #2177 (comment) created by gburnett-nvidia
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ControlFreec pipeline does not run Fix linting from a comment #547: Issue comment #2278 (comment) created by nicolas-source
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fix(markduplicates): avoid duplicate alignment emission under -stub Fix linting from a comment #546: Issue comment #2277 (comment) created by FriederikeHanssen
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ControlFreec pipeline does not run Fix linting from a comment #545: Issue comment #2278 (comment) created by FriederikeHanssen
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Add GPU-accelerated mutectcaller from Parabricks Fix linting from a comment #544: Issue comment #2180 (comment) created by gburnett-nvidia
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varlociraptor error during "MERGE_GERMLINE_SOMATIC_VCFS" Fix linting from a comment #543: Issue comment #2231 (comment) created by ahwanpandey
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varlociraptor custom scenario parameter issue Fix linting from a comment #542: Issue comment #2230 (comment) created by ahwanpandey
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Investigating potential mutect2 filter bug Fix linting from a comment #541: Issue comment #2062 (comment) created by maxulysse
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Fix parabricks aligner producing nothing with --no_intervals Fix linting from a comment #540: Issue comment #2275 (comment) created by famosab
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avoid misleading sample-sheet errors on unrelated pipeline abort (#1629) Fix linting from a comment #539: Issue comment #2245 (comment) created by famosab
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WIP Internal Benchmarking Fix linting from a comment #538: Issue comment #1721 (comment) created by famosab
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Remove executor dependency from accelerator directive Fix linting from a comment #537: Issue comment #2181 (comment) created by mahesh-panchal
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Remove executor dependency from accelerator directive Fix linting from a comment #536: Issue comment #2181 (comment) created by famosab
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Add parabricks/applybqsr Fix linting from a comment #535: Issue comment #2268 (comment) created by famosab
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Add Parabricks (GPU-based) DeepVariant Fix linting from a comment #534: Issue comment #2177 (comment) created by gburnett-nvidia
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Add GPU-accelerated mutectcaller from Parabricks Fix linting from a comment #533: Issue comment #2180 (comment) created by gburnett-nvidia
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Release 3.10.0 Fix linting from a comment #532: Issue comment #2270 (comment) created by FriederikeHanssen
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Skipped
Fix CRAM compatibility and Parabricks GPU options Fix linting from a comment #531: Issue comment #2264 (comment) created by FriederikeHanssen
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Samplesheet validation issue for --step annotate Fix linting from a comment #530: Issue comment #2201 (comment) created by robinyn
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Samplesheet validation issue for --step annotate Fix linting from a comment #529: Issue comment #2201 (comment) created by DHelix
Skipped
Skipped
Samplesheet validation issue for --step annotate Fix linting from a comment #528: Issue comment #2201 (comment) created by robinyn
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Add GPU-accelerated mutectcaller from Parabricks Fix linting from a comment #527: Issue comment #2180 (comment) created by gburnett-nvidia
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