Repositories list

• unicorn

  Public
  Tool repositiory for bam files

  metagenomicsenvironmental-dnaadna+ 2

  metagenomicsenvironmental-dnaadnadna-sequencinghigh-performance-sequencing

  C

  •

  MIT License

  •0•7•4•0•Updated Mar 19, 2026Mar 19, 2026

• 2025-kapk-microbial

  Public
  This repository contains the complete analysis pipeline and downstream analysis code for processing and analyzing environmental ancient DNA (aDNA) from Kap Købe…

  Python

  •0•1•1•0•Updated Mar 19, 2026Mar 19, 2026

• aeDNA

  Public
  Python

  •0•4•0•2•Updated Mar 17, 2026Mar 17, 2026

• onebam

  Public
  ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything

  C

  •

  MIT License

  •3•0•0•0•Updated Mar 17, 2026Mar 17, 2026

• ngs-derep

  Public
  Ancient Environmental DNA dereplication workflow module

  snakemakengsedna+ 1

  snakemakengsednadereplication

  Python

  •0•0•0•1•Updated Mar 16, 2026Mar 16, 2026

• ngs-taxon

  Public
  Ancient Environmental DNA taxonomy assignment workflow module

  snakemakengsedna+ 1

  snakemakengsednataxonomic-assignment

  Python

  •0•0•0•1•Updated Mar 16, 2026Mar 16, 2026

• ngs-trim

  Public
  Ancient Environmental DNA trimming workflow module

  snakemakengsedna+ 1

  snakemakengsednatrimming-bases

  Python

  •0•0•0•1•Updated Mar 16, 2026Mar 16, 2026

• seqcenter

  Public
  Scripts for the Sequencing Center

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Mar 6, 2026Mar 6, 2026

• MultiQC

  Public
  Aggregate results from bioinformatics analyses across many samples into a single report.

  JavaScript

  •

  GNU General Public License v3.0

  •656•0•0•0•Updated Feb 10, 2026Feb 10, 2026

• Tjornin_Butterfly

  Public
  R

  •0•1•0•0•Updated Oct 30, 2025Oct 30, 2025

• LakeTjornin

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

• geogenetics-public

  Public
  Public GeoGenetics resources

  0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

• aeGenomicsCourse2025

  Public

  GeoGenetics/aeGenomicsCourse2025’s past year of commit activity
  This repo is the a course homepage for a PhD course in ancient environmental genomics

  0•7•0•0•Updated Sep 21, 2025Sep 21, 2025

• ONEcode

  Public
  1-code framework: docs, C-library, and tools

  C

  •

  Other

  •6•0•0•0•Updated Sep 18, 2025Sep 18, 2025

• .github

  Public
  0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

• data-analysis-2025

  Public
  Jupyter Notebook

  •0•3•0•0•Updated Mar 14, 2025Mar 14, 2025

• bwa

  Public
  Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)

  environmental-dnaancient-dnashort-read-mapping

  environmental-dnaancient-dnashort-read-mapping

  C

  •

  GNU General Public License v3.0

  •575•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• aeGenomicsCourse2024

  Public
  Smarty

  •

  MIT License

  •1•4•0•0•Updated Sep 25, 2024Sep 25, 2024

• aeGenomicsCourse2023

  Public
  Smarty

  •4•4•0•0•Updated Sep 5, 2024Sep 5, 2024

• data-analysis-2024

  Public
  HTML

  •0•0•0•0•Updated Jun 7, 2024Jun 7, 2024

• aeDNA_Journal_Club

  Public
  This is the homepage for the Ancient Environmental DNA Journal Club

  0•0•0•0•Updated Mar 22, 2024Mar 22, 2024